RNA id: TU17110



Basic Information


Item Value
RNA id TU17110
length 746
RNA type TUCP
GC content 0.40
exon number 3
gene id G12872
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 48428800 ~ 48488219 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cagcattcccactaataaaaactagaaaatgcatttcctgcggaaaatgcgtgggaatgctgaatagctgaattgctaaagctaactggttgaatagctgaaatctgtaagaagaagttgaaatagtgagaatagttgaaaaagtggaaatcgttaaaaagttagctttaaaagctgaaaaatgacaaaatatgtagaacattgtggagtctttagctgaagctgaagaacagttgaaaaagtggaaattggttcaataagttaaagaaagtaagagagggagggaggagggatggagagaggagagagagagaaaaagagaaagagacagggagagagggagggagaaggcgggatgagagagaaggagagagagagaaaaagagagagagagacagagagagatggagggagaaggagggatggagagaggacagagagagggagggagaaggagggatggagagaggacagagagagagaaaagagagagaaacagggagagaaagaaaagacaaacagagagatagagagggagggagaaggcgggatggagaaagaaggagagagagagaaatctgtaagaagaagttgaaatagtgagaatagttgaaaaagtggaaatcgttaaaaagttggctttaaaagctgaaaaatgacaaaatatgtagaacattgtcgagtctttagctgaagctgaagaatagttgaaaaagtggagtggaaatcgttaaaaagttggctTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005636493.1 lncRNA upstream 51700 48373491 ~ 48377153 (+) True LOC120544367
TU17084 lncRNA upstream 89337 48339192 ~ 48339516 (+) True G12850
TU17083 lncRNA upstream 89746 48338865 ~ 48339107 (+) True G12849
TU17080 lncRNA upstream 94116 48334225 ~ 48334737 (+) True G12846
TU17079 lncRNA upstream 97348 48330454 ~ 48331505 (+) True G12845
TU17194 lncRNA downstream 110452 48598671 ~ 48601646 (+) True G12932
TU17207 lncRNA downstream 209318 48697537 ~ 48698140 (+) True G12940
XM_039776668.1 mRNA upstream 107996 48214308 ~ 48320857 (+) True neurl1aa
XM_039776742.1 mRNA upstream 132105 48214304 ~ 48296748 (+) False neurl1aa
XM_039776844.1 mRNA upstream 226099 48200870 ~ 48202754 (+) True LOC120543662
XM_039808779.1 mRNA upstream 1303366 46846017 ~ 47125487 (+) False LOC120564084
XM_039810075.1 mRNA downstream 9246 48497465 ~ 48609279 (+) True LOC120564817
XM_039796786.1 mRNA downstream 123060 48611279 ~ 48704119 (+) False LOC120556912
XM_039796795.1 mRNA downstream 124047 48612266 ~ 48703780 (+) False LOC120556912
XM_039796778.1 mRNA downstream 124050 48612269 ~ 48704119 (+) True LOC120556912
XM_039796809.1 mRNA downstream 226258 48714477 ~ 48721252 (+) True LOC120556923
XR_005640059.1 other upstream 1303366 46846017 ~ 47125487 (+) False LOC120564084
XR_005640058.1 other upstream 1307877 46846017 ~ 47120976 (+) False LOC120564084
TU16762 other upstream 2011080 46416428 ~ 46417773 (+) True G12553
unassigned_transcript_72 other upstream 2221128 46207653 ~ 46207725 (+) True trnak-uuu_1
unassigned_transcript_71 other upstream 2221849 46206932 ~ 46207004 (+) True trnat-ugu

Expression Profile