RNA id: XR_005640722.1


Basic Information

Item Value
RNA id XR_005640722.1
length 501
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id LOC120568412
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3954828 ~ 3963879 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAGTGCTGACTGACAGAGCTTTAGTAACGCTGCCagctgcttctgactggcagAACTCCAGCTCAGACCGGCCCTCTGCtctgatgtcagactgacattTCTAGGTTTGGATGTAAAGGAGGGAGGAAGTGATGaacacagacagcagcagcGTCTGTCAGAGTCTGCAGACGGAGGAGGACGTCTCTCTGACCTGATCTGGACGGGACTTTAACAGGtcgccgttgcaaatgagaacctgttctcaacggcctacctggaTGAGTGAGTTTCTCCACCCACAACGTGACAACTACCTTTGCAAAGTGAGAGCAGCTGGGATGTTATGCAGAATGGAAAAGTTGTTTAGCCGGGCTGTGGATGCAGAAACTTTACACCTTGcccagagcagcagcagagaccagactctcctgaacctgaaccagctgtgtgtccatcaAGAGCCACCAGTCCATGGATCCACCTTAAGTGTTTAAAGGACAGCTTCCTGCAGAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640721.1 lncRNA downstream 78252 3873544 ~ 3876578 (-) True LOC120568407
TU1839 lncRNA downstream 85052 3869463 ~ 3869778 (-) True G1318
TU1825 lncRNA downstream 137976 3816015 ~ 3816854 (-) True G1312
TU1824 lncRNA downstream 138993 3814613 ~ 3815837 (-) True G1311
TU1822 lncRNA downstream 142957 3811507 ~ 3811873 (-) True G1309
XR_005640719.1 lncRNA upstream 8142 3972021 ~ 3974470 (-) True LOC120568400
TU1991 lncRNA upstream 275364 4239243 ~ 4321225 (-) True G1436
TU1997 lncRNA upstream 283783 4247662 ~ 4251483 (-) True G1440
TU2019 lncRNA upstream 369210 4333089 ~ 4333324 (-) True G1459
TU2042 lncRNA upstream 456289 4420168 ~ 4450896 (-) False G1477
XM_039815878.1 mRNA downstream 9414 3913798 ~ 3945416 (-) True LOC120568380
XM_039815652.1 mRNA downstream 53083 3879887 ~ 3901747 (-) True LOC120568258
XM_039807111.1 mRNA downstream 101033 3821980 ~ 3853797 (-) True slc8a1a
XM_039816505.1 mRNA downstream 271960 3666913 ~ 3682870 (-) True srd5a2a
XM_039805900.1 mRNA downstream 290441 3659851 ~ 3664389 (-) True dpy30
XM_039815892.1 mRNA upstream 13412 3977291 ~ 4228514 (-) True LOC120568386
XM_039815834.1 mRNA upstream 38558 4002437 ~ 4004792 (-) False LOC120568358
XM_039815824.1 mRNA upstream 38659 4002538 ~ 4004792 (-) True LOC120568358
XM_039815785.1 mRNA upstream 42191 4006070 ~ 4013823 (-) False LOC120568346
XM_039815794.1 mRNA upstream 42191 4006070 ~ 4013823 (-) False LOC120568346
TU1727 other downstream 282292 3648688 ~ 3672538 (-) True G1242
TU1725 other downstream 306600 3581218 ~ 3648230 (-) True G1240
unassigned_transcript_1 other downstream 527808 3426950 ~ 3427022 (-) True trnak-uuu
TU1552 other downstream 544558 3408821 ~ 3410272 (-) True LOC120551303
TU1371 other downstream 976715 2975238 ~ 2978115 (-) True G1008
TU2024 other upstream 381668 4345547 ~ 4346086 (-) True G1464
TU2240 other upstream 778621 4742500 ~ 4756137 (-) True G1623
XR_005639982.1 other upstream 810938 4774817 ~ 4783916 (-) True LOC120563598
TU2366 other upstream 1112727 5076606 ~ 5085518 (-) True G1722
TU2371 other upstream 1112727 5076606 ~ 5077554 (-) False G1722

Expression Profile