RNA id: TU2453


Basic Information

Item Value
RNA id TU2453
length 1685
lncRNA type sense_over
GC content 0.43
exon number 3
gene id acaa1
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5387393 ~ 5471409 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgttcgctaaacccaccagactccatgtaaataatcagtcattttagcatcgtaaaatacacttaattCAAAGCAGACAGAAACGCAATACAACTATCAAAAGCTGTtgtgggtcgtctttccactttttcaaccatCACAagtctagttttggttgaaataaacacatagtttacagatttacatgtggagatatgctggttctatacacgctaaaagtcctgattatttacatggagtctggtgggtttagcgctagcgccttcagagctgtttctggttaaacagaaaggtctcaaagaggtttttaaaggtctatctctgtagggatcctttctataatgttgtcagacacttaaaataataatctgagtctctCACCTGCGacaaacagcacttttagtggaccaaattgacgctgaacatttgccccatagggttacattgcagcgtTCTCGCTTAATACcggaccagtttcaaagattgttgttcccatcagtcacttacacacagacAGGGTCCAGGTTGTTGCCCAGGTTCCACGTCTGAAAGGGGGCTAGAGAGATTTGAATCAACCTATAAATGAATGTCCCACTAAACTAATGCTGCTGTATTTTAGCTGGTAGTGTTCGTAGAGAAACAGCAGCTGATGAAGTGCCTTTGATTCCACGTTGCTGATCTAACCCCTGCTTTaattctttaattaaaaacaggtaaatatatattttttaaaacgaTGCAAGCTgaactatgattttttttgggaCGAAAACATTGTGGGTTTTCTGCTCGAGAGGAAGGAGGAGTTACCGCGCTGAAATAAGCCAACAAAAACCAATCCTCCAGCTAGAAGAGCACGCACACTTCTCTGTACTCAGAACAGAAGAACTGGTGAATGGCAGAAAGTAAACTGGTCAAAACATGCCAAACCTAGACCAACTAATCTGACTCTTAATCTCCCACATAGACCAACTAATCTGACTGGTAATATCCCACATAGACCAACTAATCTGACTGGTAATCTCCCACATAGACCAACTAATCTGACTGGTAATATCCCACATAGACCAACTAATCTGACTGGTAATCTCCCACATAGACCAACTAATCTGACTGGTAATCTCCCACATAGACCAACTATTCTGACTGGTAATCTCCCACATAGACCAACTAATCTGACTGGTAATCTCCCACATAGACCAACTAATCTGACTGGTAATCTCCCACATAGACCAACTATTCTGACTGGTAATCTCCCACATAGACCAACTATTCTGACTGGTAATCTCCCACATAGACCAACTATTCTGACTGGTAATCTCCCACATAGACCAACTAATCTGACTGGTAATATCCCACATAGACCAACTATTCTGACTGGTAATCTCCCACATAGACCAACTAATCTGACTCTTAATCTCCCACATAGACCAACTAATCTGACTCTTAATCTCCCACATAGACCAACTAATCTGACTCTTAATCTCCCACATAGACCAACTAATCTGACTCTTAATCTCCCACATAGACCAACTATTCTGACTCTTAATCTCTAGTTAATCTTACATGAGGCCCAATCTATAACTGCTATTATCTACAATGACTTTTAAATAACTGTAGAACTGAGCTGTGAAGAATTTCTTCATAATACTGATTTtctgtgtgtaaaaaaataaataaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2492 lncRNA upstream 52994 5401531 ~ 5415677 (+) False G1787
TU2491 lncRNA upstream 53399 5401531 ~ 5415272 (+) False G1787
TU2434 lncRNA upstream 89406 5378140 ~ 5379265 (+) True G1774
TU2433 lncRNA upstream 89553 5378140 ~ 5379118 (+) False G1774
TU2506 lncRNA downstream 3024 5474433 ~ 5475665 (+) True G1791
TU2508 lncRNA downstream 12133 5483542 ~ 5487749 (+) True G1792
TU2530 lncRNA downstream 166291 5637700 ~ 5651160 (+) True G1813
TU2535 lncRNA downstream 218560 5689969 ~ 5692473 (+) True G1817
TU2489 lncRNA downstream 294565 5765974 ~ 5779474 (+) False G1787
XM_039807758.1 mRNA upstream 96901 5361351 ~ 5371770 (+) True btbd3a
XM_039807772.1 mRNA upstream 140754 5306988 ~ 5327917 (+) True LOC120563544
XM_039807626.1 mRNA upstream 271554 5180196 ~ 5197117 (+) False LOC120563443
XM_039809144.1 mRNA downstream 29623 5501032 ~ 5518108 (+) True ndufaf5
XM_039809476.1 mRNA downstream 118260 5589669 ~ 5591008 (+) True LOC120564466
XM_039809499.1 mRNA downstream 135045 5606454 ~ 5607801 (+) True LOC120564476
XM_039808416.1 mRNA downstream 318888 5790297 ~ 5803234 (+) True LOC120563910
XM_039808423.1 mRNA downstream 318888 5790297 ~ 5803234 (+) False LOC120563910
TU2438 other upstream 93764 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 140914 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 245927 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 429957 4977783 ~ 5038714 (+) False G1600
TU2539 other downstream 405199 5876608 ~ 5916374 (+) False snrpb2
XR_005641751.1 other downstream 914193 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 914193 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 914193 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 914193 6385602 ~ 6402040 (+) False LOC120573424

Expression Profile