RNA id: TU2491


Basic Information

Item Value
RNA id TU2491
length 797
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1787
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5401531 ~ 5779880 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTtttagaaaacaacaacaggaccagacactgtttttgtgacaatatgtcttttatttttgaatgctTATTtgagtatatagtatatagtgaAGAGAATCTGCTGAATAAAGAACACAACATATCGGTTTTAGGAATAAAAAGGAGCTAGTTCATTAAACCAGTGGACTATAtgaattattaatagttattatGAAGTGTTATTATAGTTGCATTCTCCTCTTGTATCACAGAAAGGTCCGACAAAatatacacttttattttctatatGGCCATTTTGGATAAAAAGATCGTCACCACTCATGTCTGGTAGGTTTACCTTTGGATGgagtcaggctagctgtttccagtctttatgctaagctaggctagctgtttccccctgtttccagtctttatgctaaacaaGGCTAACGCCTGCTTGAGGGAACTTCATCTTTAGCGTACACACATGAGAGTTGTATCGATCTGAACAATAACTCTCAGAGAGAAATCTAATTAGTGTGttaatattttatcagatgagTGGGCGCTGTTTATAACAGATTATATTCAGTAAACTAAAATGGAAAAGATGTGTGagtattcaaatgttttctgtatttcattGTGTTATTTACTATAGATTTAAGTCCAATTActtatttgtttttacatttacatttggaCGGAGTCAGGCacgctgtttccagtctttatgctaagctaagctagctgtttctgtccgtttccagtctttatgctaagctatgctagctgtttccccgtttccagtctttatgctaaactaagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434 lncRNA upstream 22266 5378140 ~ 5379265 (+) True G1774
TU2433 lncRNA upstream 22413 5378140 ~ 5379118 (+) False G1774
TU2435 lncRNA upstream 22413 5378140 ~ 5379118 (+) False G1774
TU2480 lncRNA upstream 23757 5375578 ~ 5377774 (+) True G1786
TU2479 lncRNA upstream 23757 5376963 ~ 5377774 (+) False G1786
TU2442 lncRNA downstream 53399 5468671 ~ 5471362 (+) False acaa1
TU2444 lncRNA downstream 53399 5468671 ~ 5471362 (+) False acaa1
TU2445 lncRNA downstream 53399 5468671 ~ 5471362 (+) False acaa1
TU2446 lncRNA downstream 53399 5468671 ~ 5471362 (+) False acaa1
TU2447 lncRNA downstream 53399 5468671 ~ 5471362 (+) True acaa1
XM_039807758.1 mRNA upstream 29761 5361351 ~ 5371770 (+) True btbd3a
XM_039807772.1 mRNA upstream 73614 5306988 ~ 5327917 (+) True LOC120563544
XM_039807626.1 mRNA upstream 204414 5180196 ~ 5197117 (+) False LOC120563443
XM_039809144.1 mRNA downstream 85760 5501032 ~ 5518108 (+) True ndufaf5
XM_039809476.1 mRNA downstream 174397 5589669 ~ 5591008 (+) True LOC120564466
XM_039809499.1 mRNA downstream 191182 5606454 ~ 5607801 (+) True LOC120564476
XM_039808416.1 mRNA downstream 375025 5790297 ~ 5803234 (+) True LOC120563910
XM_039808423.1 mRNA downstream 375025 5790297 ~ 5803234 (+) False LOC120563910
TU2438 other upstream 26624 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 73774 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 178787 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 362817 4977783 ~ 5038714 (+) False G1600
TU2539 other downstream 461336 5876608 ~ 5916374 (+) False snrpb2
XR_005641751.1 other downstream 970330 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 970330 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 970330 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 970330 6385602 ~ 6402040 (+) False LOC120573424

Expression Profile