RNA id: TU2539



Basic Information


Item Value
RNA id TU2539
length 663
RNA type TUCP
GC content 0.39
exon number 7
gene id snrpb2
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5876547 ~ 5916374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTTTCATATGagcggtgtggagagagaggagAGACGCCACCATGGATATCCGACCAAATCACACCATTTACATCAACAATATCAATGATAAAGTCAAGAAAGAAGAGCTGAAGCGCTCGCTCTACGCGCTCTTCTCTCAGTTCGGTCAGATAATCGACATCGTGGCCATGAAGACGGCGAAGATGAGGGGACAGGCCTTTGTCGTCTTCAAAGAGCTCGCCGGCGCCACCAACGCACTGAGGCAACTTCAGGGCTTCCCGTTCTACAACAAGCCCATGAGGATACAGTACGCGAAGACTGACTCCGAGGTCATCGCCAAGGTGAAAGGCACGTACGGCGacaaggagaagaagaaggacaagaagaagaaagccCAGGAGGTGTCGGCGGTCAGCCTAATGAAGAAACCGGCAGCGGGATCAGCGGCGCCTGTCAACTCTGCTGCCGTCCAGGTGGTGGACAACCCACCGAACTACATCCTGTTCCTCAACAACCTGCCTGAAGAGACCAACGAGATGATGCTCTCCATGCTGTTCAACCAGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2557 lncRNA upstream 18338 5767143 ~ 5858270 (+) True G1836
TU2501 lncRNA upstream 96728 5776366 ~ 5779880 (+) False G1787
TU2489 lncRNA upstream 97134 5765974 ~ 5779474 (+) False G1787
TU2493 lncRNA upstream 97134 5765974 ~ 5779474 (+) False G1787
TU2495 lncRNA upstream 97134 5765974 ~ 5779474 (+) False G1787
XR_005640051.1 lncRNA downstream 3181 5919555 ~ 5921025 (+) True LOC120564002
TU2617 lncRNA downstream 25075 5941449 ~ 5955263 (+) True G1886
TU2561 lncRNA downstream 43841 5960215 ~ 6016641 (+) True G1840
TU2554 lncRNA downstream 54851 5971225 ~ 5984068 (+) True G1833
TU2546 lncRNA downstream 65791 5982165 ~ 6031193 (+) True G1825
XM_039808416.1 mRNA upstream 73374 5790297 ~ 5803234 (+) True LOC120563910
XM_039808423.1 mRNA upstream 73374 5790297 ~ 5803234 (+) False LOC120563910
XM_039809499.1 mRNA upstream 268807 5606454 ~ 5607801 (+) True LOC120564476
XM_039809476.1 mRNA upstream 285600 5589669 ~ 5591008 (+) True LOC120564466
XM_039809144.1 mRNA upstream 358500 5501032 ~ 5518108 (+) True ndufaf5
XM_039808449.1 mRNA downstream 122837 6039211 ~ 6058589 (+) True prokr1a
XM_039808345.1 mRNA downstream 172478 6088852 ~ 6093726 (+) True LOC120563871
XM_039808352.1 mRNA downstream 173820 6090194 ~ 6093727 (+) False LOC120563871
XM_039808319.1 mRNA downstream 188771 6105145 ~ 6109440 (+) True LOC120563868
XM_039808329.1 mRNA downstream 188771 6105145 ~ 6109440 (+) False LOC120563868
TU2438 other upstream 501701 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 548851 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 653864 5218068 ~ 5222744 (+) True G1756
TU2210 other upstream 837894 4977783 ~ 5038714 (+) False G1600
TU2209 other upstream 837894 5034565 ~ 5038714 (+) True G1600
XR_005641751.1 other downstream 469228 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 469228 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 469228 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 469228 6385602 ~ 6402040 (+) False LOC120573424
TU2728 other downstream 512457 6428831 ~ 6436864 (+) False aftpha

Expression Profile