RNA id: TU2706


Basic Information

Item Value
RNA id TU2706
length 444
lncRNA type read_through
GC content 0.46
exon number 2
gene id G1932
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6366489 ~ 6466386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttttttaaaaaaaaaaaaataaataaaaaaaaaaatatgtttttgttgttgatttctttccaggttttttttgtcactattttcagtgattttttttaacatgtttttgtcaatttttttccaAGGGTTTTTGTAACaatttgacgtttttgtcaattttttttcagagatttaaaaaaaagaagctatattttaaaatgtttttgtcgattgttttcagtgattttttttttttttttaaacattttgttgatttctttccaggttttttttgtcactatttccaCCTTTTATCTCATCCTCTCAAACGTTCCTCCGCCACATTTCACTGCACATATTAAAAGTATGAGTATGTgatagggctgctccctcttagccgattagtcgactaatcggttattttggtcttagtcaacttagatttctttagtccattagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2724 lncRNA upstream 16907 6348780 ~ 6349582 (+) True G1941
TU2697 lncRNA upstream 49757 6275673 ~ 6316732 (+) True G1927
TU2698 lncRNA upstream 49757 6316262 ~ 6316732 (+) False G1927
TU2699 lncRNA upstream 49757 6316262 ~ 6316732 (+) False G1927
TU2695 lncRNA upstream 90979 6273836 ~ 6275510 (+) True G1926
TU2772 lncRNA downstream 91220 6557606 ~ 6557845 (+) True G1983
TU3135 lncRNA downstream 115739 6582125 ~ 6582434 (+) True G2230
TU3148 lncRNA downstream 165287 6631673 ~ 6632069 (+) True G2241
TU3173 lncRNA downstream 225755 6692141 ~ 6692371 (+) True G2257
TU3174 lncRNA downstream 227526 6693912 ~ 6694211 (+) True G2258
XM_039808508.1 mRNA upstream 133890 6163406 ~ 6232599 (+) True ppp3r1b
XM_039808518.1 mRNA upstream 133890 6223422 ~ 6232599 (+) False ppp3r1b
XM_039808530.1 mRNA upstream 209098 6148380 ~ 6157391 (+) True cnrip1a
XM_039808483.1 mRNA upstream 220462 6132635 ~ 6146027 (+) False LOC120563935
XM_039810365.1 mRNA downstream 43839 6510225 ~ 6528948 (+) True LOC120565047
XM_039815363.1 mRNA downstream 125050 6591436 ~ 6659319 (+) True LOC120568096
XM_039810077.1 mRNA downstream 229198 6695584 ~ 6722958 (+) True LOC120564833
XM_039810088.1 mRNA downstream 261542 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA downstream 263472 6729858 ~ 6763797 (+) True LOC120564849
TU2539 other upstream 450115 5876608 ~ 5916374 (+) False snrpb2
TU2438 other upstream 991582 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 1038732 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 1143745 5218068 ~ 5222744 (+) True G1756
TU2209 other upstream 1327775 5034565 ~ 5038714 (+) True G1600
TU2759 other downstream 66055 6532441 ~ 6534370 (+) True G1973
XR_005640968.1 other downstream 331080 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 332104 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 333189 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 335016 6801402 ~ 6801516 (+) True LOC120569789

Expression Profile