RNA id: TU2806


Basic Information

Item Value
RNA id TU2806
length 4494
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G2009
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5320067 ~ 5346322 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcattgaatgagaaggtgtgtccaaacttttggcctgtactgtatgtatttgtgtctaaacgacatataaacatcttttcctgttctacgttgcctggaaacgcttccaacacgcttgcgtgtcgcgtgaaaaataggcgtcggttctatttctagcgtGCATTTGCGTTTTCGGCGCCGGAGACGTGCGTGTcgcgcaggcagtgtgcacgctctaacctgttaccatggcagctgacacgctcacgccacccagccagtgtgcaggcggCCTTAACCAGacgcccaaaccacctcaactggctcctttagacgcaaaaaaaagctaattttaagaccattatgtgaaaaatgacagagcttcAGAAACATGAAAAAAGTTACATACAGTCACTTTAAGATGAAACAGCAAAAGCATCCACAGTCATTTTCTACATAGATTTTACAAGGAAAGCTTAATAACGTCACATAAGTAATGTTTTGATCTTTCGGGCTCAACTAGAAGTCCCTAAATAATTTGCTTTTCACTTAATTTGCTTCCCACAAAATTTCCCTTAAATTACACCACATACGCTTATAAATAGATCTGCTTTAATACTTAAAAACTATACACGTGTGCATCTGttcaccccttttttttttgttttttttttacagaaacacaacacaaaatccCCCAAAAGTTTTCCCTCCGTTTCCCACGAACACGACAAGTTTGAGATGATCATTTTGGcaaaaaaggcagaaaaccCCCAAAGTGTTACGTAGTGCCGAGAGGTAAAGTCACGTACATCTACGTACGTCTTAAGGGCGCTGACGCACCAACCCGATTTATCGGCcttcggacagtctggcgagagtctgttcggtgcgtttccgtgccgtcgtcagtctgaggagccgtcggctttaatttgggccgatttgacttgttgaatcggccggTGGGCGgccggactcaatgaccaatctgattggtggagtgctagcccttgactagcgaatcagtgcgcTTATgtcaaaggtcccatggcatgacaatttcactttatgaggctTTTTAACATTAGTATGAGTTCttgagatttcagatacagtattaggggaccactaaggtctatattaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatatagtattaggggaccactaaggtctttataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagcatccaaggagcatcatgtcatgggacctttaaaatgacCAATTACCGGAAacgacgagcgggatgagcctgaCCAActcctctcaaaatctgaggaaaatcttaaaaaaactgacctttgttgatctgaaatgagattcagcaactgcacggcctatttctctcctAAAAAGTTTTTACacaaacacgtttcggtgaactattttcgtgaaatacgagatcgtattccgaacgagacGCCATTAATGGTCCggctttgaaattcgggagaagccagacccacgtgacgtgagttttggaccaactcggggagactgatcggTCCGACTGGCTTTCCTGCCGAGGgccggccgtctggttggtgcgTCAGAGCCTTTACAACACCAGCGgaaaccccccccaaaaaataaaaacttcacCTTTCAAGTAAAACAGAGAATCTATATACCTGCATCATACAAGTCTGTcaccaaaaaaacacacaaagagttGCTTAAAAAACTCGTTATCTCTCCAAAATAAGAATAATTACAACAAAATACAATATCTTCAGGCAGTCGGCGTATAAAGCAGTTTACAAATCTAGAGTTTTTGGGAACTGAAGGGCTGTAAAGTGTtattaaaaggtgccctgccatacaaaaccgttttgacttgcattttttgaGATATGtaaggtccatatgtgtttgtgttatgtggtgaatgtgaaaatgaactgctgcctcctctgtcagctctagacactgaacagaaataagcagagaaatcagaccaatcacagaagctggtcagtctgacatcatactgcctgagctcattactattcatgagctcgcccagttgggctggggtaaaggattctgataaccaggctctcattggctagctgctagccaatcagattcaaacagcttagctcgttgaatattaatgataactggcagaaatcgagccgaATCTTcgtgcaggctttctataccgcgctagaatggcttgaaacaaggtaaccaaggttacagagtccatggtagaccttcagacatcaccacaaagtcatgaaatacgtgtggcagggcacctttaaacagtGTTGTTatttcacacaaacaaaatgaGCTAATTAGCGTTAGCAACAACAAGGTTTTTAGTAGGAAGCGTCTCGACTCGGTTTCCGAGTCTTTTGGCCTTTTTGTCATTTGGCGTAAATGTTTGATGTGATCAAAGTAAAAACAGGTGAATGAGAAGAGCTGTAGCTCGTCACCGTTTTCCCATCTTTAAAACGCACGATAAAGAGCGGCAGGTGGTTTCAAAAACGAAGCGATCGATCGacacgttctcactcccaactcgtgaATTACTGACACTcgctgggccctattttaacgatgtaagcGCATTTAGGGCCAAATTTAGTGTCCAAAATATGGAAAAGaatggaaaaaagggtctgtgtgcaCGGGcacctggttctaaagggttgtacttagtgtcttcattaatcagaggtgtttttttttcgcgtaacatgcaatcaaccaatcagagatcatctcccattccctttaaaagtatgtaccagagtctgataggaccaggctaatggaccacagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctaatggaccacagtctggtaggaccaggctacagtaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctacagtaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctacagtaccagagtctggtaggaccaggctaatgtaccagagtctggtaggaccaggctacagtgccagagtctggtaggaccaggctaatgtaccagagtctggtaggaccaggctacagtaccagagtctggtaggaccaggctagcgtagcagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggcaagtgtaccagagtctggtaggaccaggctagtgtaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctagtgtaccagagtctggtaggaccaggctaatgtaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctacagtactagagtctggtaggaccaggctaatggaacagagtctggtaggaccaggctacagtactagagtctggtaggaccaggctacagtaccagagtctggtaggaccaggctaatggaacagagtctggtaggaccaggctacagtactagagtctggtaggaccaggctaatggaacagagtctggtaggaccaggctacagtactagagtctggtaggaccaggctagtgtaccagagtctggtaggaccaggctaataaaattgaataaaacacccaaaaatcAATGTAAACAATCATTAATTTGACCTGCGAACAACATacatccaagttattttgggggcaatttggttgtaagaaacccatatttttggggctttttcgcCTTTAATTGCTAGGACAGCTTAGgtgagacatgcaggaaatcatcacaggtcggactcgaaccctggacgtCTGCGTCGAGGCATGAGCCTCTCAGCATacgtgcgcccgctctacccacggagccaacccggccacagaaAACCCATATCTCTGATATTAACACGGGTCAACACACGAGTTAAAAGAGGACAAGTCTGAACGGCTGATAACATAAGAGACGCTGTGAAGGAACGAAAGGCACGTTATCACGAGCAATAACACTGACAGACGGTCGAAAACTGGAGCGTTTTACGTTAAGGAAAGAAAGGTCACacttcacttgaaggtatcgacataatcgtgacatcaCACTGTCATAACTGTGACATCACACGGCCATGAACGcgtcataaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2838 lncRNA downstream 61 5340534 ~ 5341507 (-) True G2022
TU2790 lncRNA downstream 13811 5259990 ~ 5327757 (-) True G1994
TU2811 lncRNA downstream 36403 5276050 ~ 5305165 (-) False G2010
TU2813 lncRNA downstream 36403 5276050 ~ 5305165 (-) False G2010
TU2817 lncRNA downstream 52515 5270921 ~ 5289053 (-) False G2010
TU2855 lncRNA upstream 29170 5375492 ~ 5377786 (-) True G2034
TU2872 lncRNA upstream 69014 5415336 ~ 5415888 (-) True G2047
TU2883 lncRNA upstream 112459 5458781 ~ 5459073 (-) True G2056
TU2898 lncRNA upstream 155731 5502053 ~ 5507095 (-) True G2064
TU2904 lncRNA upstream 229530 5575852 ~ 5624485 (-) True G2070
XM_039807985.1 mRNA downstream 65872 5243915 ~ 5275696 (-) True LOC120563650
XM_039807848.1 mRNA downstream 191156 5148516 ~ 5150412 (-) True LOC120563591
XM_039808807.1 mRNA downstream 206263 5114020 ~ 5135305 (-) True LOC120564103
XM_039807374.1 mRNA downstream 275378 5037606 ~ 5066190 (-) True LOC120563200
XM_039807726.1 mRNA downstream 490994 4827103 ~ 4850574 (-) True LOC120563519
XM_039807930.1 mRNA upstream 55239 5401561 ~ 5407181 (-) True LOC120563624
XM_039807939.1 mRNA upstream 55239 5401561 ~ 5407146 (-) False LOC120563624
XM_039807947.1 mRNA upstream 55239 5401561 ~ 5407138 (-) False LOC120563624
XM_039807835.1 mRNA upstream 123741 5470063 ~ 5471326 (-) True LOC120563585
XM_039807973.1 mRNA upstream 125124 5471446 ~ 5472005 (-) True LOC120563643
TU2814 other downstream 36403 5288076 ~ 5305165 (-) False G2010
TU2812 other downstream 36403 5288339 ~ 5305165 (-) False G2010
TU2392 other downstream 191149 5149923 ~ 5150419 (-) False LOC120563591
TU2375 other downstream 243934 5097369 ~ 5097634 (-) True G1726
TU2371 other downstream 264014 5076606 ~ 5077554 (-) False G1722
TU2877 other upstream 149716 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other upstream 149716 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other upstream 149716 5496038 ~ 5499938 (-) False LOC120563672
TU3000 other upstream 764817 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 856004 6202326 ~ 6206890 (-) False LOC120563747

Expression Profile