RNA id: TU2877



Basic Information


Item Value
RNA id TU2877
length 871
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC120563672
representative False

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5476545 ~ 5499993 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACGGAAGCGCTGCATGCTGGGAAAACACGTGTAGCAGAAGACCAGAGAGTAAAGGCTCTGAATCCTTCCTCCAGCGCTGATACGGCGCCGCGTCCCGCTGTGTCTTTCAGGCGACACGTCAACAGTTTTTTCCCCCCGCCACCATGTCGTCCAAAAAGCGTGCGGAGGGCGACGAGCGGTTCCAGCGGGTGCAGAAGGACCCCCGGTTCTGGGAGATGCCCGAGAGGGACCGCAAGGTCACGATCGACAAGCGCTTCCAGTCCATGTTCCACGACAAGCGCTTCAAGGAGAAGTACACGGTGGACAAGAGGGGCCGGCCCGTCAACCAGACCTCCACCGAGGACCTGAAGCGCTTCTACCAGCTCTCGGACGACGAGGACGAGGAGGACGAGGAGACAAAGAAGGAAGCGGCAGAGggcaagagaaagaagaaagtgaaGGAGAAGCTGGGGAAGGCTgatgaagaggagaagaaagggaAAGCGGCGCCGAGCAAAGGCGGGAAAGGAGAGCAGCCAGAACGTGTCGTCCGAGTTGTTGTAGAGGGAGACGCCGAGGACGACGCCGAGCAGCAAACTGCGGAGAGGGACGATGTTGACCTGGGAGACAGGGTCGCGGTCAGCAGTGGGGAGGACGAAgacgacgatgatgatgatgatgatgatgatgaagaagaggagagcGATGTGGCGAGCGGATCCGGCGCGGAGGAGTCCGGTCTAGATtcggaggaggaggacagcGACAGCGAGCCAGATCTGGCCAGGGGGAAGGGAAACGTGGAGACGAGCTCGGACGAAGATGACGAAGACGACGATGTGGACGCCATCctgaggaaggaggaagaggagatcGAGCACGACTGGGGCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2883 lncRNA downstream 36965 5458781 ~ 5459073 (-) True G2056
TU2872 lncRNA downstream 80150 5415336 ~ 5415888 (-) True G2047
TU2855 lncRNA downstream 118252 5375492 ~ 5377786 (-) True G2034
TU2819 lncRNA downstream 142886 5231497 ~ 5353152 (-) False G2010
TU2818 lncRNA downstream 142886 5276050 ~ 5353152 (-) True G2010
TU2898 lncRNA upstream 2115 5502053 ~ 5507095 (-) True G2064
TU2904 lncRNA upstream 75914 5575852 ~ 5624485 (-) True G2070
TU2911 lncRNA upstream 190025 5689963 ~ 5692475 (-) True G2076
TU2916 lncRNA upstream 231891 5731829 ~ 5732354 (-) False LOC120563692
XR_005640040.1 lncRNA upstream 293677 5793615 ~ 5795764 (-) True LOC120563981
XM_039807973.1 mRNA downstream 24033 5471446 ~ 5472005 (-) True LOC120563643
XM_039807835.1 mRNA downstream 24712 5470063 ~ 5471326 (-) True LOC120563585
XM_039807930.1 mRNA downstream 88857 5401561 ~ 5407181 (-) True LOC120563624
XM_039807939.1 mRNA downstream 88892 5401561 ~ 5407146 (-) False LOC120563624
XM_039807947.1 mRNA downstream 88900 5401561 ~ 5407138 (-) False LOC120563624
XM_039808067.1 mRNA upstream 231501 5731439 ~ 5736986 (-) False LOC120563692
XM_039808051.1 mRNA upstream 231501 5731439 ~ 5736986 (-) True LOC120563692
XM_039808060.1 mRNA upstream 231501 5731439 ~ 5736819 (-) False LOC120563692
XM_039808130.1 mRNA upstream 313427 5813365 ~ 5874875 (-) False kif16ba
XM_039808121.1 mRNA upstream 313427 5813365 ~ 5874875 (-) False kif16ba
TU2814 other downstream 190873 5288076 ~ 5305165 (-) False G2010
TU2812 other downstream 190873 5288339 ~ 5305165 (-) False G2010
TU2392 other downstream 345619 5149923 ~ 5150419 (-) False LOC120563591
TU2375 other downstream 398404 5097369 ~ 5097634 (-) True G1726
TU2366 other downstream 410520 5076606 ~ 5085518 (-) True G1722
TU3000 other upstream 611201 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 702388 6202326 ~ 6206890 (-) False LOC120563747
TU3049 other upstream 766668 6266606 ~ 6267238 (-) True G2177
TU3116 other upstream 1021568 6521506 ~ 6534312 (-) True G2219
TU3119 other upstream 1021568 6521506 ~ 6534312 (-) False G2219

Expression Profile