RNA id: TU294


Basic Information

Item Value
RNA id TU294
length 794
RNA type TUCP
GC content 0.30
exon number 2
gene id G199
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1016907 ~ 1019038 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAAGAGGTGGAGCAACACTGGAAAGAGGAGAGATACAACGTCACACTCCAGAAATGAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTAGAGACAagactctgtttctctctgaaagaaaactcaaactgacttcatcaggtctttctcaacaacacagcagagtctctgccaaacactgATATGGCTGCTGCAAACTATCTGCAATCTGAAGATCAGTTTCGatgctccatctgtctggatgtttTCACTGATCCTGTCACCACAACATGTGGTCACAACTTCTGCAAAAACTGCATCACTGAACACTGGAATACTAATGACCAGTACCTGTGTCCAATGTGTAAAAAGGCTTTCAACACAAGACCTGAGCTGCACGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgaCCATGTCAGGCctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTAGGGAGCATGATAAAcctctggagctgttctgtaagacCGACCAGACATGTGTCTGCACGTTCTGCACTGTTTTAGATCACAATAAGCATGATGTTGTTCCTCTGAAAGAAGAATGTGAAGGAAAGAAGGCCgagctggggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253 lncRNA upstream 4038 934177 ~ 1012869 (+) False LOC120566368
TU383 lncRNA upstream 48387 967330 ~ 968520 (+) True G281
XR_005640492.1 lncRNA upstream 124784 891621 ~ 892123 (+) True LOC120566926
TU372 lncRNA upstream 204960 808561 ~ 811947 (+) True G270
TU299 lncRNA upstream 263187 708153 ~ 753720 (+) False LOC120566394
TU396 lncRNA downstream 97586 1116624 ~ 1122161 (+) False G292
XR_005640481.1 lncRNA downstream 283675 1302713 ~ 1303535 (+) True LOC120566887
TU416 lncRNA downstream 332482 1351520 ~ 1352050 (+) True G309
TU417 lncRNA downstream 335098 1354136 ~ 1354378 (+) True G310
TU430 lncRNA downstream 364092 1383130 ~ 1383452 (+) True G321
XM_039812759.1 mRNA upstream 4084 907840 ~ 1012823 (+) True LOC120566368
XM_039812853.1 mRNA upstream 5292 926306 ~ 1011615 (+) False LOC120566414
XM_039812862.1 mRNA upstream 5292 1002383 ~ 1011615 (+) True LOC120566414
XM_039813108.1 mRNA upstream 32321 973805 ~ 984586 (+) True LOC120566581
XM_039813100.1 mRNA upstream 32749 973815 ~ 984158 (+) False LOC120566581
XM_039813345.1 mRNA downstream 47660 1066698 ~ 1072641 (+) True LOC120566725
XM_039812733.1 mRNA downstream 55311 1074349 ~ 1125737 (+) False LOC120566319
XM_039812977.1 mRNA downstream 73981 1093019 ~ 1103529 (+) True LOC120566475
XM_039812687.1 mRNA downstream 97521 1116559 ~ 1125737 (+) True LOC120566319
XM_039812696.1 mRNA downstream 97521 1116559 ~ 1125737 (+) False LOC120566319
TU268 other upstream 7174 1002426 ~ 1009733 (+) False LOC120566414
TU271 other upstream 418700 583390 ~ 598207 (+) True G176
TU279 other upstream 535017 477971 ~ 481890 (+) True G184
TU56 other upstream 802357 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 839845 175133 ~ 177062 (+) False LOC120560058
TU395 other downstream 97586 1116624 ~ 1144413 (+) True G292
TU260 other downstream 125616 1144654 ~ 1158559 (+) True G165
TU241 other downstream 174623 1193661 ~ 1219085 (+) True G151
TU237 other downstream 292829 1311867 ~ 1312431 (+) True G149
TU486 other downstream 517177 1536215 ~ 1536697 (+) True G355

Expression Profile