RNA id: TU2971


Basic Information

Item Value
RNA id TU2971
length 474
lncRNA type read_through
GC content 0.41
exon number 2
gene id G2122
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5881917 ~ 6023413 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attttacaaaaccaGATGTAGGCCAGAGATTATCTGCTCGACCTCGTGAACGACGGGACTGAATTTtaccaacaaacaaaaaaagtagaaagaaaaacaaacagctctGTATGGTTTACAAAAATCAATGTGTGAACACAACGGTAATCCAGGGACCATGTCCCCCTCAGAGTCTCTGTGTGTCCAGCGACTGAACTCGGGGACTACTTCTTGGCGTAGGTGATCTTCATGGCGCAGGTGGCTGTGATCCGGAAGCCTTGCAGTGCGTCTTTAGCCACGCCCGCCTGCGTCTCGCTCTCAAACTCCACGAAGGAGATGTCGTGTTTCCCCGGGACCAGTCGCACCTCTTTGAAACCGGGAAACCTGCAGaggacaaaaaacacacaaagaaacccTGTCAATACtaatctttatttatagagAGCTTTTCAAAAGCTACATTACAAAGGGCTTCACAAAACAccccaaaaaaac

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2966 lncRNA downstream 11914 5869701 ~ 5870003 (-) True G2118
TU2953 lncRNA downstream 74068 5802850 ~ 5807849 (-) True G2105
XR_005640047.1 lncRNA downstream 86161 5793615 ~ 5795756 (-) False LOC120563981
TU2990 lncRNA upstream 38807 6062220 ~ 6063639 (-) True G2137
TU2995 lncRNA upstream 57242 6080655 ~ 6081592 (-) True G2142
TU3002 lncRNA upstream 93084 6116497 ~ 6158715 (-) True G2147
TU3019 lncRNA upstream 112914 6136327 ~ 6238233 (-) False G2152
TU3027 lncRNA upstream 135741 6159154 ~ 6159731 (-) True G2158
XM_039808130.1 mRNA downstream 7042 5813365 ~ 5874875 (-) False kif16ba
XM_039808121.1 mRNA downstream 7042 5813365 ~ 5874875 (-) False kif16ba
XM_039808114.1 mRNA downstream 7042 5813365 ~ 5874875 (-) False kif16ba
XM_039808097.1 mRNA downstream 7042 5821636 ~ 5874875 (-) False kif16ba
XM_039808107.1 mRNA downstream 7042 5821636 ~ 5874875 (-) False kif16ba
XM_039808229.1 mRNA upstream 5642 6029055 ~ 6032497 (-) True LOC120563814
XM_039808274.1 mRNA upstream 18813 6042226 ~ 6048389 (-) True LOC120563841
XM_039808399.1 mRNA upstream 41779 6065192 ~ 6119534 (-) False aplf
XM_039808404.1 mRNA upstream 41779 6065192 ~ 6119534 (-) True aplf
XM_039808296.1 mRNA upstream 160422 6183835 ~ 6198235 (-) False LOC120563858
TU2877 other downstream 381979 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other downstream 381979 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other downstream 381979 5496038 ~ 5499938 (-) False LOC120563672
TU2814 other downstream 576752 5288076 ~ 5305165 (-) False G2010
TU3000 other upstream 87726 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 178913 6202326 ~ 6206890 (-) False LOC120563747
TU3049 other upstream 243193 6266606 ~ 6267238 (-) True G2177
TU3116 other upstream 498093 6521506 ~ 6534312 (-) True G2219
TU3119 other upstream 498093 6521506 ~ 6534312 (-) False G2219

Expression Profile