RNA id: TU2990


Basic Information

Item Value
RNA id TU2990
length 1324
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G2137
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6062220 ~ 6063639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgctccaccactttgttttatctaacgttagcacctctctctctctctctctctctctatctatccctctctccctctctgttctttctctagctcgctccaccactttgttttatctaacgttagcacctctctctctctccctctctctctatccctctctccctctctgttctttctctagctcgctccaccactttgtttattctaacgttagcacagctCTAGCGCTCTAGGATTTTGTATCAGTAGCTGTTGTTGGAGaaacaaaagaacaacaacGCTGccagcttttctttctttttttactacaaaagcgccctagtcatttttttcttgttaaatAGAACGCCGAGTGTGAACATAAATTTAATCTtaatttttacaatatgggacctttagaAGCCGTGAAGCTTTACAGGAGCATCTGGTTCCCAACGGTTTTACAGATCACACAAATCCAATCCGTTCTctctccgaactcgtaaaataccgACGTTTGGACGGCGGCTGTCGGCGTCTGAAGCGACGAAAAAAAGCGTCCTTCATCGTGTTTGTAGAacgtaccggggagagcagtgtggtggatgggtcacacacgggaccttcacccaggagaccagggttcagTGTCCAGCATGTGTCTTTAACCGTCCCGGTATTGTCACCTGTCACGGAaacaaccttttccttaacctaaccgcgtcaaaagtgacgccagtAGTCCTGTCCAAGCACGTTCAGATAAAGCATGTTAtgtgacgctaaaggagacttttagcgtcaatgtgaccgaccaagcgtccgtatgttacgagatgggagtgagaagcTGTTGGCACATCAAATCCAACATGACCTAAGACCTAAAATACACTCCTGGCTCTGTGGCCTCTCGTCTGTATGCTGACGCCTCATTTAAAGGTTATAGAgttcgtttttgtttttgcttctaAGATGCCAATTCGCAAAAAAGTTGTCTTCACAGGTGTCATGGCAACCTGAAACACAACAGTGGACGGCAGTAATTCAGGctgatttaaagaaaatgtgtttttgtgtacgAAGAGCATGCCTCGTGAGTCGGGCAGCTTTAAATGTAAATTCTAATTAAGAAATGTTCCCGAAACGTCAGCGCaacatcagaagagacaaacaCACTCCAACAGTGTTTGTAATCagcacttcttcttcttcttttttcattgTATCTTTTACGATTTATTTTTGATTTCATTTCCAGATGAATCTCCATCTGTTTCTGTTTGGGATTGATTGGATTGATCGATTTTGTGTTAATATGTACAATTCAGGAGTTTTTATG

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0006259 DNA metabolic process biological_process
GO:0016887 ATPase activity molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2971 lncRNA downstream 38807 5881917 ~ 6023413 (-) True G2122
TU2975 lncRNA downstream 149957 5911178 ~ 5912263 (-) True G2126
TU2966 lncRNA downstream 192217 5869701 ~ 5870003 (-) True G2118
TU2953 lncRNA downstream 254371 5802850 ~ 5807849 (-) True G2105
XR_005640048.1 lncRNA downstream 266619 5793615 ~ 5795601 (-) False LOC120563981
TU2995 lncRNA upstream 17016 6080655 ~ 6081592 (-) True G2142
TU3002 lncRNA upstream 52858 6116497 ~ 6158715 (-) True G2147
TU3019 lncRNA upstream 72688 6136327 ~ 6238233 (-) False G2152
TU3027 lncRNA upstream 95515 6159154 ~ 6159731 (-) True G2158
TU3029 lncRNA upstream 99615 6163254 ~ 6163612 (-) True G2160
XM_039808274.1 mRNA downstream 13831 6042226 ~ 6048389 (-) True LOC120563841
XM_039808229.1 mRNA downstream 29723 6029055 ~ 6032497 (-) True LOC120563814
XM_039808189.1 mRNA downstream 29736 6011199 ~ 6032484 (-) False LOC120563765
XM_039808183.1 mRNA downstream 40976 6011199 ~ 6021244 (-) False LOC120563765
XM_039808174.1 mRNA downstream 45464 6008097 ~ 6016756 (-) True LOC120563765
XM_039808399.1 mRNA upstream 1553 6065192 ~ 6119534 (-) False aplf
XM_039808404.1 mRNA upstream 1553 6065192 ~ 6119534 (-) True aplf
XM_039808296.1 mRNA upstream 120196 6183835 ~ 6198235 (-) False LOC120563858
XM_039808305.1 mRNA upstream 120196 6183835 ~ 6188793 (-) True LOC120563858
XM_039808141.1 mRNA upstream 137308 6200947 ~ 6206809 (-) True LOC120563747
TU2877 other downstream 562282 5496038 ~ 5499938 (-) False LOC120563672
TU2878 other downstream 562282 5496038 ~ 5499938 (-) False LOC120563672
TU2879 other downstream 562282 5496038 ~ 5499938 (-) False LOC120563672
TU2814 other downstream 757055 5288076 ~ 5305165 (-) False G2010
TU3000 other upstream 47500 6111139 ~ 6111592 (-) True G2146
TU2942 other upstream 138687 6202326 ~ 6206890 (-) False LOC120563747
TU3049 other upstream 202967 6266606 ~ 6267238 (-) True G2177
TU3116 other upstream 457867 6521506 ~ 6534312 (-) True G2219
TU3119 other upstream 457867 6521506 ~ 6534312 (-) False G2219

Expression Profile