RNA id: TU3257


Basic Information

Item Value
RNA id TU3257
length 956
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G2327
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6886366 ~ 6887399 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tTAATTTTGACCAATGTATTGAGTTGATTCCTGCCCTTTCTTCTTTAAATATTCTGATTCAGGTGTTAAAGTGGTGAAAGTTCTTCTCTTGACCAAACTGTGACGATGTTAGATTTGCCTTaaactttttaaatgtgtatttattcCTTTATCTCTTCGGTGAAATGTTTagtaaatgaatgcagaatgtaACAGCTGATTACTGCCTTAAAGAGCCTTTAACACTAATAGTGCGTGCCATTTACAAGTCACATttctcattgttttcattagctctagccaggttagccattgttagcgataccaattcaattcagttcagttttatttatagtatcaaatcataacaagatgttatctcgagacactttacagatagagtaggtctagaccgcactctgtaatttacaaagacccaacaattacagtaattccccccaagagcaagcattagcagtggcgaggagaaactcgAAACCTTGGCAGTTGATAACGAAGCGTTACGCTGTATTTTGTGCATATAAAAtacagcgtaacaacatgtccacagatagaaggtggacaggactgtgtgtacgactgatttagtgagacacaagtaagacagaagtgctaattAAACTGTACCTGACTGCAGCTTTCGCTACTGTTGATGCCACGTTGGATTTTTAGTTCCCAACTCCAAAATCTGAGGTTAAGGGAGCTGAATTTgacttccgagtacaaatggaacgcactataaggcctcctgcacactgggcTGCGTGGCGTTGAGCGTGGCgttgagcgtggcgtttctgttgcgtggcgttttctacgtctttacacaccagaaaggtgtctgacgctgctgctactactgctgctgctgctgctactactactactactgctactactgctactactactactactactactactactactgctactactactgctactactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3256 lncRNA downstream 529 6885076 ~ 6885837 (-) True G2326
TU3251 lncRNA downstream 26650 6857134 ~ 6859716 (-) True G2322
TU3249 lncRNA downstream 39617 6846521 ~ 6846749 (-) True G2320
TU3248 lncRNA downstream 44764 6841374 ~ 6841602 (-) True G2319
TU3247 lncRNA downstream 58261 6827143 ~ 6828105 (-) True G2318
TU3270 lncRNA upstream 1905 6889304 ~ 6889609 (-) False LOC120565104
TU3274 lncRNA upstream 34870 6922269 ~ 6938939 (-) False LOC120565104
TU3276 lncRNA upstream 60870 6948269 ~ 6977637 (-) False G2342
TU3277 lncRNA upstream 61007 6948406 ~ 6977637 (-) True G2342
TU3278 lncRNA upstream 89881 6977280 ~ 6977637 (-) False G2342
XM_039803634.1 mRNA downstream 10129 6808752 ~ 6876237 (-) False vps54
XM_039803641.1 mRNA downstream 10129 6808752 ~ 6876237 (-) False vps54
XM_039803626.1 mRNA downstream 10129 6808752 ~ 6876237 (-) True vps54
XM_039810402.1 mRNA downstream 304768 6540642 ~ 6581598 (-) True spred2a
XM_039824067.1 mRNA downstream 381860 6494574 ~ 6504506 (-) False LOC120574032
XM_039810502.1 mRNA upstream 1889 6889288 ~ 6938987 (-) True LOC120565104
XM_039820724.1 mRNA upstream 115105 7002504 ~ 7017659 (-) False LOC120571633
XM_039823631.1 mRNA upstream 253335 7140734 ~ 7155323 (-) False zgc:66455
XM_039822887.1 mRNA upstream 253335 7140734 ~ 7155323 (-) True zgc:66455
XM_039811084.1 mRNA upstream 271471 7158870 ~ 7223862 (-) False b3gnt2a
TU3212 other downstream 10153 6855291 ~ 6876213 (-) False vps54
TU3213 other downstream 10153 6855291 ~ 6876213 (-) False vps54
XR_005640961.1 other downstream 90758 6795494 ~ 6795608 (-) True LOC120569746
XR_005640977.1 other downstream 91650 6794604 ~ 6794716 (-) True LOC120569800
XR_005640958.1 other downstream 92160 6794092 ~ 6794206 (-) True LOC120569742
TU3271 other upstream 2535 6889934 ~ 6902349 (-) False LOC120565104
unassigned_transcript_2 other upstream 134175 7021574 ~ 7021645 (-) True trnae-uuc
unassigned_transcript_3 other upstream 135718 7023117 ~ 7023188 (-) True trnae-uuc_1
unassigned_transcript_4 other upstream 144695 7032094 ~ 7032165 (-) True trnae-uuc_2
unassigned_transcript_5 other upstream 147770 7035169 ~ 7035240 (-) True trnae-uuc_3

Expression Profile