RNA id: TU3407


Basic Information

Item Value
RNA id TU3407
length 222
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G2428
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7385132 ~ 7385353 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaacgcgccgctggattgggaaaccctgagttgactgaactagttgttaaccagtgCCGTGACAccggttatgcgggaccgcggttgttagggttagtgaagccgggtaactgaaagagatccagggcatgttgatcttgattcgtagtacaggcctctgctgCTGACCAGCTAAATCAGGGAGAGTGGATGCAGGTTTGCCTCATTAGGTCTTTTCTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3351 lncRNA upstream 141660 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA upstream 141660 7241821 ~ 7243472 (+) False G2386
TU3320 lncRNA upstream 236648 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 236648 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 236648 7147274 ~ 7148484 (+) False G2374
TU3471 lncRNA downstream 168687 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 203290 7588643 ~ 7591076 (+) True G2505
TU3510 lncRNA downstream 216680 7602033 ~ 7603591 (+) True G2512
TU3524 lncRNA downstream 273051 7658404 ~ 7659023 (+) True G2523
TU3525 lncRNA downstream 274047 7659400 ~ 7660095 (+) True G2524
XM_039810376.1 mRNA upstream 145539 7238071 ~ 7239593 (+) True LOC120565053
XM_039810088.1 mRNA upstream 621335 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 621335 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 662174 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 725813 6591436 ~ 6659319 (+) True LOC120568096
XM_039815515.1 mRNA downstream 4746 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 227570 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 308232 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 333603 7718956 ~ 7743994 (+) True LOC120563246
XM_039807380.1 mRNA downstream 333603 7718956 ~ 7726536 (+) False LOC120563246
unassigned_transcript_51 other upstream 171576 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 172098 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 173127 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 175690 7209371 ~ 7209442 (+) True trnae-uuc_46
unassigned_transcript_47 other upstream 176202 7208859 ~ 7208930 (+) True trnae-uuc_45
TU3532 other downstream 313912 7699265 ~ 7699540 (+) True G2530
TU3574 other downstream 556194 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 704460 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 1024504 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 1506095 8891448 ~ 8893493 (+) False zbtb45

Expression Profile