RNA id: TU372


Basic Information

Item Value
RNA id TU372
length 381
lncRNA type intronic
GC content 0.44
exon number 2
gene id G270
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 808561 ~ 811947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCAAGTTGACGGTGTTTGTGATGCTGAGGAGAGAGCATCCTCCGCGGCAGGTCTCCACACAGGCAGGCCGTGTGTTTAGGGACATGTGATGTCTTTATTATTGGTATTACATGTTATTTTATCACCGGGAGTTTGAACCGTTTTCATCCTGAGCTCAGCGATGGGGGGTTTCTCCGAGAGTGGTGCAGTGTCGCCCGGACACAGCAGACACGGACAGGGCTCTGGCTCCGGCAATAACGGCAAGAAAACGTCGAAAAAGTCGCGAACGAAAAGAGGCAAACGAGGCAGGAAAAggaggaataaaaagaacaacagGAACAACAGAACACCGCCGCCGTATTTCCCACCGGAGgctgaagaaggaaacattgAGTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299 lncRNA upstream 54841 708153 ~ 753720 (+) False LOC120566394
TU362 lncRNA upstream 116332 686445 ~ 692229 (+) True G261
TU320 lncRNA upstream 285572 522532 ~ 522989 (+) True G221
TU106 lncRNA upstream 398099 409741 ~ 410462 (+) True G55
TU100 lncRNA upstream 421913 370651 ~ 386648 (+) True G50
TU290 lncRNA downstream 73160 885107 ~ 1195250 (+) True G195
XR_005640492.1 lncRNA downstream 79674 891621 ~ 892123 (+) True LOC120566926
TU253 lncRNA downstream 122230 934177 ~ 1012869 (+) False LOC120566368
TU383 lncRNA downstream 155383 967330 ~ 968520 (+) True G281
TU396 lncRNA downstream 304677 1116624 ~ 1122161 (+) False G292
XM_039813248.1 mRNA upstream 1518 803958 ~ 807043 (+) False LOC120566667
XM_039813240.1 mRNA upstream 2373 632750 ~ 806188 (+) True LOC120566667
XM_039813330.1 mRNA upstream 16656 788102 ~ 791905 (+) True LOC120566718
XM_039813269.1 mRNA upstream 34836 756425 ~ 773725 (+) False LOC120566682
XM_039813260.1 mRNA upstream 34836 756426 ~ 773725 (+) True LOC120566682
XM_039813541.1 mRNA downstream 28715 840662 ~ 858533 (+) True LOC120566870
XM_039812759.1 mRNA downstream 95893 907840 ~ 1012823 (+) True LOC120566368
XM_039812767.1 mRNA downstream 95895 907842 ~ 914983 (+) False LOC120566368
XM_039812853.1 mRNA downstream 114359 926306 ~ 1011615 (+) False LOC120566414
XM_039813108.1 mRNA downstream 161858 973805 ~ 984586 (+) True LOC120566581
TU271 other upstream 210354 583390 ~ 598207 (+) True G176
TU279 other upstream 326671 477971 ~ 481890 (+) True G184
TU56 other upstream 594011 211235 ~ 214550 (+) True LOC120560073
TU13 other upstream 631499 175133 ~ 177062 (+) False LOC120560058
TU28 other upstream 735655 72084 ~ 72906 (+) False G11
TU268 other downstream 190479 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 204960 1016907 ~ 1019038 (+) True G199
TU395 other downstream 304677 1116624 ~ 1144413 (+) True G292
TU260 other downstream 332707 1144654 ~ 1158559 (+) True G165
TU241 other downstream 381714 1193661 ~ 1219085 (+) True G151

Expression Profile