RNA id: TCONS_00008393


Basic Information

Item Value
RNA id TCONS_00008393
length 295
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id XLOC_003302
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12466766 ~ 12467060 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGCGGATCGCTTGAGCTCAGGGTTTCTGGACTGCAGTGGACTATGTCGATCGGGTATCCGCACTAAGTTCGGTATCGATATGGTGCTCCTGGGTGAGCTTGGGACCGCCAGGTCGTTTAAGGAGGAGTGAACCGGCCCAGGTTGGAAACGGAGCAGGTCAAAGCTCCCGTGCCGATCAGTAGTGGGATCGTGCCTGTGAATAGACACTTCAGTTCAACCTGAgcgacacagagagacgcagact

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006458 lncRNA upstream 299976 12166486 ~ 12166790 (+) True XLOC_003282
TCONS_00008570 lncRNA upstream 563256 11891591 ~ 11903510 (+) False XLOC_003278
TCONS_00006480 lncRNA downstream 26812 12493872 ~ 12494177 (+) True XLOC_003304
TCONS_00008394 lncRNA downstream 55710 12522770 ~ 12523029 (+) True XLOC_003307
TCONS_00006494 lncRNA downstream 251049 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00006501 lncRNA downstream 277575 12744635 ~ 12752361 (+) False XLOC_003321
TCONS_00008574 lncRNA downstream 315155 12782215 ~ 12785059 (+) True XLOC_003322
TCONS_00006460 mRNA upstream 282223 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA upstream 282506 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006456 mRNA upstream 374588 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006455 mRNA upstream 486912 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006454 mRNA upstream 616771 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006495 mRNA downstream 252884 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006496 mRNA downstream 252928 12719988 ~ 12727230 (+) False XLOC_003320
TCONS_00006497 mRNA downstream 253111 12720171 ~ 12727529 (+) False XLOC_003320
TCONS_00006498 mRNA downstream 253248 12720308 ~ 12727651 (+) True XLOC_003320
TCONS_00006499 mRNA downstream 277515 12744575 ~ 12770546 (+) False XLOC_003321
TCONS_00006478 other upstream 25814 12440656 ~ 12440952 (+) True XLOC_003301
TCONS_00006477 other upstream 34501 12431978 ~ 12432265 (+) True XLOC_003300
TCONS_00006476 other upstream 60751 12405730 ~ 12406015 (+) True XLOC_003299
TCONS_00006475 other upstream 77919 12388547 ~ 12388847 (+) True XLOC_003298
TCONS_00006474 other upstream 92804 12373666 ~ 12373962 (+) True XLOC_003297
TCONS_00006479 other downstream 8382 12475442 ~ 12475702 (+) True XLOC_003303
TCONS_00006481 other downstream 35491 12502551 ~ 12502847 (+) True XLOC_003305
TCONS_00006482 other downstream 49873 12516933 ~ 12517229 (+) True XLOC_003306
TCONS_00006483 other downstream 69224 12536284 ~ 12536580 (+) True XLOC_003308
TCONS_00006484 other downstream 74979 12542039 ~ 12542334 (+) True XLOC_003309

Expression Profile

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