RNA id: TU3958


Basic Information

Item Value
RNA id TU3958
length 1591
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G2828
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8134678 ~ 8137391 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtggtgtgtccGACTCTGGTCGAGGCAGTAGAAGGTGATGCTGTTACTCTGGGGGGTTCTCTGAGTCCTCCGCTCAACTTGACTCCTTACACGTTGGATCTGAAGAGACTTGACCTCCATGACGATCTGGTCCACGTCTACCGACATGGACAGGACCATTTCCCTCCACAGAGTCGTCACTACAGAGGCAGAACAACTCTGATCCATGAAGACCTGATCGGAGGAACCGTGACGCTGCACATCTCCTCAGTAAATCTGTCTGACTCTGGACCGTATGAAGTCTACGTCCCAGACCTGAAAGCCCGCTGTGAATTTAACCTCACTGTTGaaagaaaagcaaacaGGACAAAGAGAACTGATCCCACCACATCTGGACCTCCAGTGACCGAGTCAGAGCATCGGGATGGTGAGAACAGGAAGACTGCCCGTGCTGTTatccttccctctcttctcctcctcggGACtctcctggttctggttctgatgAGAGGAAAGATCAagAGTTGCATCGAGAGGCTCAGAGGAAGGAACGAGGAAGAACCAGAGAACtccctgaacctgaacctggaAGCAACCGAAGACCCAGAGAGAGAGCTGCAGGAAATGTCGTCTTACTGTAGGAAACCTCGTCTGAGAGCTTTAGTGAAGGTTGACCATCAAGCGATCCCACTGCCTTCACCAGTTGTAGCAGCCCTTGGATCCAAAGAGAGAGTCTCGACTGATGCGTAAGGTGTCTTTTATTTAGTTTACCAGACCAGCATGACGTTCAACATTTGTTTCATCCATCATCATCCTAGCACCGTAAAAACTGTATTGAAAACATAAACccaacaaacatttcacacagtTTTGTTTTCAGTGATACAACTTCATTACGTGAACAAACATTTAGGATGACAAACAAGAATTACACCGCAAAATAGACCATACATACATGCAAACTATTTCTGAATGACTGTGAAGGAGAATGAAAGCACATCGACCTCGCTGTGCTCACCAAGGAATGCAAAACCATATACGACAGTCCTTTTCTTCCATCATCAAACGGGCGtctatgggattagttttgtgactttaattccaagcaaaacttctcaagtatcaaacaaaaaacactaactcaagcaaaaaaattgtcacctcaaaggtaaaacttaaaacttgcaaacaaaacatttgtctagttgtaaactattggtcttttatttgtttgatatgatgtccttttgtttacagttccctctgcttctttctcaatgatcactTGTCTCTTGCATCTCcttcacgtttgcagtcatgctcccagctttctcctttgcGCTCCGTGacttttgcttgcgattctgacacagatatctcgcgtgggcgggtcttacaggggtgcgtccccattggctaatgagtgttaaggggaaagtttgagtgacagctcagcctcagtgcaggtaaacacacgttagagactcagagtctggtctggaggacacacaagccactccacagcggATTACTAcggattaataaagtctcacgtcaggcagcaggcagaccaaccaggaggacgtggagcagcagagggagaggagcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3888 lncRNA downstream 85208 8044532 ~ 8049470 (-) True G2799
TU3851 lncRNA downstream 166249 7965872 ~ 7968429 (-) True G2767
TU3850 lncRNA downstream 169413 7963266 ~ 7965265 (-) True G2766
TU3863 lncRNA downstream 195741 7935940 ~ 7938937 (-) False capn9
TU3843 lncRNA downstream 274239 7813793 ~ 7860439 (-) True G2759
TU3959 lncRNA upstream 1453 8138844 ~ 8143373 (-) True G2829
TU3960 lncRNA upstream 2025 8139416 ~ 8141214 (-) False G2829
TU3976 lncRNA upstream 75526 8212917 ~ 8225961 (-) True G2842
TU3898 lncRNA upstream 80660 8218051 ~ 8297164 (-) True G2808
TU3980 lncRNA upstream 91582 8228973 ~ 8229267 (-) True G2846
XM_039817181.1 mRNA downstream 39415 8079222 ~ 8095263 (-) True cdc6
XM_039804856.1 mRNA downstream 155221 7969350 ~ 7979457 (-) True taf5l
XM_039816074.1 mRNA downstream 177057 7935940 ~ 7957621 (-) True capn9
XM_039804049.1 mRNA downstream 203274 7915198 ~ 7931404 (-) False ltv1
XM_039800144.1 mRNA upstream 27569 8164960 ~ 8293126 (-) False LOC120558849
XM_039800153.1 mRNA upstream 27569 8164960 ~ 8293096 (-) True LOC120558849
XM_039800161.1 mRNA upstream 110903 8248294 ~ 8293125 (-) False LOC120558849
XM_039800239.1 mRNA upstream 161190 8298581 ~ 8332326 (-) True LOC120558897
XM_039800174.1 mRNA upstream 167317 8304708 ~ 8316194 (-) True LOC120558865
TU3830 other downstream 370730 7739824 ~ 7763948 (-) True G2752
XR_005640903.1 other downstream 562221 7572321 ~ 7572457 (-) True LOC120569585
XR_005640913.1 other downstream 576780 7557767 ~ 7557898 (-) True LOC120569612
XR_005640861.1 other downstream 762120 7331956 ~ 7372558 (-) True LOC120569296
TU3357 other downstream 894550 7225340 ~ 7240128 (-) True commd1
TU3971 other upstream 69861 8207252 ~ 8209535 (-) False G2840
TU3972 other upstream 69861 8207252 ~ 8209535 (-) False G2840
TU3973 other upstream 69861 8207252 ~ 8209535 (-) True G2840
TU4012 other upstream 346321 8483712 ~ 8501141 (-) False wipf2a
TU4151 other upstream 621258 8758649 ~ 8767973 (-) True G2938

Expression Profile