RNA id: XM_039801786.1


Basic Information

Item Value
RNA id XM_039801786.1
length 2191
RNA type mRNA
GC content 0.61
exon number 9
gene id wipf2a
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8435799 ~ 8501162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTTGTGTCGGTACGTTTCCGGGTTTCCGAGAAGGCACCGATAAAACGGTGTCAACGGCGAGTATGGCACTGCTCGCAAGTCAGGAGTGCGGGTAAAGTTTTCCGTAGCTACCTGGAAACTATTAAAAGTGACTCTCAAACGCTTCGTTTTCGCAAAGAAGTCTTGCAACGTAACTTGCAGGCAGCCGGACTGCGCTGACACTGACAGCTGGGAAGTAAACAGCTCGATGCTAACAAGCTAACTGCGGCTAGCTCCGCTGTAGAACCGCCGCTAGCCGAGCTAGGTAACTTTAACCGTCGacagcgagctaacgttagccggctaacctgtttttttttttattttttatttttttttggtagcGTTAAGTTACATCACCAGGACTTGCCAGCACCCTAACCCAACCTACTGCACCGACGGAAGGATTCGCCACAGCGGCACTTTCCATTCATGTTGTTTTGGAGGACGAGACTACTGTCTTTAGATATTTTATTAtctatagattattattattatcaaacGTCCTGTTCTTCGAACCAGGGAGTCGCCGTGTGTCGTCTCAGCTGAGACGGGGAAGTCACCGGTCCTTTATCCCCCCACCCACTCACAGAGAGGTGCCAACAGAGGGACAGGATGCCTattcctccccctccccctcctccgccAGGACCCCCGCCTCCCCCCACCTTCCATCAGGCGAACACGACTCCTCCCAAACTGAGTTCGTCTGAGAATAAAGGCCGAGGAGCGCTGCTGTCGGACATCCACAAAGGGGCCAAACTAAAGAAGGTCGCCGCGATCAACGACCGGAGCAGTCCGATTATAGagaCAGGAGGAGGTagcagtggaggaggaggaggaggaggaggaggaggaggtggtttTGGAGGCGGAGCTCCGTTGGGAATGGGAGGCCTTTTCCAAGGAGGTGTGCCAAAATTACGCCCAGTTGGAGATGGTCCAGCGGGCGGTACGGTGGGCAGATCGGCCCTGCGGCCCCCGGGGTCCCGGCCCGCGGCCCCTCGCCCCCCCCCAGGCCGCTCCCCGTCGCCCTCCCCGGCCAACAAGCCCTCTCCGCCGGAGCACCAGCGCTCCCACCGGCCATCGCTGCCCGACATCTCGCgctcctcctccagcagctcCTCCGCAGGCAGCGGGATGAAGCACAGCACCTCCGCCCCCCCGCCTCCTCCCCCCTTCAACCGAGGAGGCCGTAGCAACGCGCCGCCTACCCCGACTCAGAAGGCACACGCTCCACCTTCCTCATCCTCGTCTCACAGCAGAgagaaccctagagaGAAGCCCCTCCCACCGATGCCCAGCAGAGGCCCGACCCCTCCCAGCTCCGTGAAGCCGCCTCCGTCTTCCAGCAGGCCGCAAACGGGTGGCTCCTCggctcctccccctcctcccccctacAGGCCGCACGCATCGGGCAACGTCTCCAACGGGGCGTCCAGCGTAGACGGGGCCGGGGCTCCGGAGCTGCCACAGAGGCACAACTCCCTGCACAAAAAACACACCTCGGGAGGCGGCAGCCAAGGACGCAGCCAagctcctccccctcctccctctccctctccctcctcctcctcccagcaGGGCAGCAGACCACCACCTCCCGCCAGAGAGCCACCTGGACGCAGAACAGCCCCCCAGGTGCCGCCCTCCGCGTCTCGTAACGGCAGTCGGGAcgcccctcctccccctcccccgtACCGCGGCCACAGCTCCGCGGTGTCGGAGTCCCTCAGCCGAGTGGGTAAACCGCctccacctctctcctcctcctcttcctcctccgtcTCGTCATCCTCCTCCACCCGAACCCCGGCTGGACccccgccgccgccgccgccgatCCGGAACGGCCAcgcctccttctcctcctccaagTCCGTCGTAGATGATTTTGAATCCAAGTTTAACTTCCACCCTATTGAAGATCTTCCACCTCCAGAGGAGTACAGGCATTTCAACAAGATCTACCCCAGCAAAAACGGCAAGGGCGTGATGAGAGGAGCTCCTCCTGCCCCCCCGGTGGGGAGGTGAACGGACCCTCAGCTCAGGACTTTAACTCTCAGTCAGCCGACTCGACAGACGGAcggttggagagagagagagagagagagagagagagggagagagagagggagagagacagggagagagacagggagagacagag

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3915 lncRNA downstream 17230 8438638 ~ 8446152 (-) False G2810
TU4002 lncRNA downstream 29481 8392356 ~ 8433901 (-) True G2862
TU3941 lncRNA downstream 30658 8395919 ~ 8432724 (-) True G2815
TU4000 lncRNA downstream 80306 8382341 ~ 8383076 (-) True G2860
TU3910 lncRNA downstream 140155 8319319 ~ 8323227 (-) True G2810
TU4030 lncRNA upstream 3972 8505134 ~ 8510325 (-) True G2878
TU4032 lncRNA upstream 8301 8509463 ~ 8518597 (-) False G2878
TU4036 lncRNA upstream 8301 8509463 ~ 8518399 (-) False G2878
TU4050 lncRNA upstream 27787 8528949 ~ 8529762 (-) True G2882
TU4069 lncRNA upstream 140141 8641303 ~ 8642482 (-) True G2892
XM_039800227.1 mRNA downstream 6035 8449938 ~ 8457347 (-) True LOC120558891
XM_039800275.1 mRNA downstream 19149 8434631 ~ 8444233 (-) True LOC120558917
XM_039800214.1 mRNA downstream 99709 8358561 ~ 8363673 (-) True LOC120558883
XM_039800239.1 mRNA downstream 131056 8298581 ~ 8332326 (-) True LOC120558897
XM_039817201.1 mRNA upstream 11083 8512245 ~ 8517252 (-) True c1h6orf120
XM_039811044.1 mRNA upstream 18773 8519935 ~ 8562298 (-) True npepps
XM_039803243.1 mRNA upstream 74071 8575233 ~ 8606773 (-) True gpr179
XM_039811772.1 mRNA upstream 230906 8732068 ~ 8739288 (-) False si:dkey-23f9.4
XM_039811764.1 mRNA upstream 230906 8732068 ~ 8739288 (-) True si:dkey-23f9.4
TU3971 other downstream 253847 8207252 ~ 8209535 (-) False G2840
TU3972 other downstream 253847 8207252 ~ 8209535 (-) False G2840
TU3973 other downstream 253847 8207252 ~ 8209535 (-) True G2840
TU3830 other downstream 699434 7739824 ~ 7763948 (-) True G2752
XR_005640903.1 other downstream 890925 7572321 ~ 7572457 (-) True LOC120569585
TU4151 other upstream 257487 8758649 ~ 8767973 (-) True G2938
TU4231 other upstream 404510 8905672 ~ 8908086 (-) True G3011
TU4635 other upstream 1024381 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 1048819 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 1525108 10026270 ~ 10042004 (-) True G3373

Expression Profile