RNA id: TU4030


Basic Information

Item Value
RNA id TU4030
length 4920
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G2878
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8505134 ~ 8518597 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtaaatagtcatgaaaataaaaaggaaacacattgaatgagaaggtgtgtccagaCTTTTGACCTGTACTGTAGATTGTCTTTATTCATACCTTACCTCTCCAAGTTTCATTTAAACGTGAATTTTGCGTCATCAATCATTGGTTGGAGATCTGATCATTTCCAGGTAGAAACCTCACGCGTCTACCAGGACGAAGATAGTCTCGTCGTTTGTCTAACTTATTCAGCAGAAGCCTCCGATACGCTttaaaactagggatgcaccgaatccaggttTTTGGTGTTcgaccgaataccgaatcctcctcccatcctcggTCCATTAACGCAGCGAACGCACTAATGTAGGTAACGTACCTGAAGtcgctgctgtctggagattccttcgcgCACAACTCGTATTTTTTCGGATGTTtcgtaacagcggccatgttgtgtgttgtttagggtcctcgccaccaccagacaaatGGGCGTTGCAGATTGAACacgtagctggacttgaatggccttctttacTACTGCCAAACAtcacttgttctgctcaccGGTTCCattttccactttctcacagcctgctgcgtcgaacgctccacctacgtgaacaccttcccgtaatcaacggcgccgtcgttacggcgaccagcgtagcgcgccgagtgcaagcgtagggttctgTTCGGTGGGAAAAAATACTAAGGTTAGGCAGAATCCGaacccccgtcaaaaagcccgatattcggccgaatcctggattcggtgcatctctatttaaagcgcccatattctgctcattttcaggttcataactgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaacaccatattgttgttgtactgcacagctctctctcactgctgcagatcctcttttcacctggtctctgttttagctacagagtgagacctcttttcatcttcttcttctgtactatctttgattgcactcacacatgctcagtagctcagatgtagatcatgtcagctagctaactctagagacagtaaaagactttgttgtttctccaactttggtcagttacaaggcaggatcagctgggagacttctaaatgagggcgcacatggaagtagttcttttgtagattatggtgaacttgtgtgtgttgtagcagtgctttgctattgagaacgaggtagcattctagcgttagcgttagccggctaacgctagcattagctggctaacgctacgagctaacggttgtggttagccagctcatttcggactgtgacgtcacagtccgagacgattttgaacagctcactaggagactgaaggcaggacacattcagaaaccgtatctcactcagaacagcatggatggattgtTTTCTaagcgtgtatgtgtgtggaagccccagagacacaaaagaacaccccaaatcaccagaaaaagtgtttttttctttttcataatatgggcactttaaaacccGTTTTTGCCGAGTGGATCCGAAGGGATCCCTTCACGGCCAGCACGAACAGGAGCAGCTCTCGCAACGTACGAGAAGCGTGCGAGCGCGGTGACGAGATGGACTTAAAATCCTAACCGATCCTTTTTGACTTTTATCATAAATCTTCAAATCAAAcgtaggctacatctacactaccaCGTTTTGATTTAGAaacgaatatcttttgctacgcgTACGCCTCGCGTCCACACTACTCCCACGTTCCCGAGCCCCTGAGAACGGAGACTTTTGGGAAACATCGCTGCCCCCATTTTTGGTTTCAAACGGAGACCTTCGGAAAACGACGGGCGCACAACAGCCGGTCTAATCGGCCTGGCGTTGTTGTCGTTGTTGTTCTCTCTGCAAAAGTCTTTCCAACTTCTACGTCCACGATTTACAACCGCAGAGTAACGTCTGGcagggctgccacctcttaatcgactaatcggtcgttttggtcttagtcgactaagatttctttagttgataagtcattttttatgcttattcataataaattactcatttccaagaaacttctgagcacatttatggtaaacacaagatttaaagtggtgcttttgcaggattaattgtggagaaactcagttttacagatggttaattaactacatttatattgtgcttttctagtcttaaccacctctcacagcgcacagctctgtcgattaaatcaactaatcgattagtcgacaaaatcctATAAGGGTTAGTCGActaatttctttagtcgaggacagccctaacGTCTGTAACGATctgcttcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgtttttactatattcgtggggtccaaaaaccgggggctatagtatacttgtggggtctgcacagcctcatggggaccaaaatgctggtccccatgagtttaaagggctgtttgagggttaagacttggttttaggactagggttagaattaggttatggttatggttaaggtgagggtaagggttaaggttaggcatttagtggtgatggttaaggttagggtaagggttaaggttaggcatttagtggtgatggttaaggttagggtaagggttaaggttaggcctttagttgggatggttagggtaaggggctagggaatgtaTTATTTCAATGATGGGTCTCCACAAAGATAGTGAtacagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggggtgtgtgtgtgtggggtgtgtgtggtggtgtgtgtggggggggtcaCGTGATATGTGGTGTCAGACGCGGCCCTAcggacggagattagttctgctaccgGTGCTAAAACTCTCGTGTGGGCCGAGAtcgtttttgtctcaaaacggcgctttaaaaaaaacgaaAGCGTAGCCGCGTAGACGTGACCTCGGCGTCAAACCGACGGCCGTAGCGGCCGACTCAGCTCTCGGGCCTGAGGACGAATGAAAACCGCGTGTCTTAACTCTGCGCGTCAACACCCCCGCGGGATGTGTGTGCAATACAGTCCTCGTCAGCCATTCTGAGGTCAGCGTGAGGTTTTTCTACAGGTCGGTTTCCCGttgggatgaataaagttgTGTCTTTATTATTGGACGTAGAGGAAGGCCTGAAAAGGTTGTTTTTAGAAAGTGAAAAGGATGATGGGAATGTGTCCTCGCGGGCAGACAAAAGAGTTCATTGGGAAGTGTTTGAAGGTTGAGAAGCTGCTGAATATGCTGTGGTGATTCTCGCCTCGCTGTTTGAAGGAGTAGTTCCTTAATTTAGGCTCCAAATGGGAACATCAGGgtttattaaaggtgctctaagcgatgtcacgcgttatttttttttttttttcggttacattttttttttgtcacatactgcaaacatctcctcactatccgctagctgcctgtcccctgaacgcACCgctctctgtagacagcccaggccccacaaacggcaacaaaaacaaaccgcgccaacctgcaccaccaaacatagcCAACAGGTAGGGCTGCGCTCGAtggaagaaattcttagtcgactaacgctCATTCAATTGTACCGACTAACCGAGTCATGCTAAacgcaccactttaattcttgtgtttaccagagatgagctcgtacggttcttggaaataagtcaaaaaagcatcaaacacgactaatcgactaaagacatctaagttgactaagaccgaaacgaccgattagtcgactaatcgactaagagggagcccgacgggacccgatgggttcggtcttaatttctcttattttacacgggctcgggcctGCGCTTCGGGTTGCcatggtaaatgagcggtcagctgatgcgtttcaattagcgtgaaaatggatcctgaggaggtgaaacggaggatggtctctggaggacttagcctgtttctttgttccaacttccaagtggcctacaGCCTCCTCTAGTCATGAATAcatgatgttaaaacatgtagaaatgactcatttttttacgaaagacaaaggagctgtgtgcgtgcggcgcagtctctcttttttttttttctttctctcccttttccgccgagtggtgcgtgtgcccgctcgcggtgcgTGTGCTGATAGacgctgtcagtacccgatccgttccaccggcacgatccgttctgcacatgtgcaagatgacacgtaggcgcagatgataatgctgcgttcattccaccaccaccaccttggaataacggcacgttagttagctaacagctaattcggctaaccgctagctgagacggcatgtaaactttaaaagaccctcaaaataaaacttgaaaataaacgttaacatatataacagctgttacgtcagttctactttacttgtgctcatttaaaatacaatcactcaatacttgtctttattgttattactgtaatgtcttaatttagctgtagctgcttttcccattaagtttgacctaacgttattttagactgaatctagctgcagaaacaacgtaaccagtggggcggggcctgttatttcgaggtggcatgaacgcagcattatcatctgcgcctacgtcatggcatacgtgtcgtcttgcacatgcgcagaacggatcgtgcaggtggaacggatcgggtactgacagacggccttttgtacagtcgggctgtaaactggttcgggcttttaaaaagctgtcaatcaaaatgtacgggtcgggctcgggccttttcgggccgtacttttaaggcccgattacagctctagcttagagcacctttttaaaGGGCTACGCCACCGTttgg

Function

GO: NA

KEGG:

id description
ko04140 Autophagy - animal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4009 lncRNA downstream 22123 8435799 ~ 8483011 (-) False wipf2a
TU4010 lncRNA downstream 36434 8460536 ~ 8468700 (-) True wipf2a
TU4021 lncRNA downstream 40347 8463689 ~ 8464787 (-) True G2874
TU3915 lncRNA downstream 58982 8438638 ~ 8446152 (-) False G2810
TU4002 lncRNA downstream 71233 8392356 ~ 8433901 (-) True G2862
TU4050 lncRNA upstream 18624 8528949 ~ 8529762 (-) True G2882
TU4069 lncRNA upstream 130978 8641303 ~ 8642482 (-) True G2892
TU4072 lncRNA upstream 133870 8644195 ~ 8645191 (-) True G2894
TU4150 lncRNA upstream 246041 8756366 ~ 8758100 (-) True G2937
TU4173 lncRNA upstream 289166 8799491 ~ 8800133 (-) True G2960
XM_039801777.1 mRNA downstream 3972 8463382 ~ 8501162 (-) False wipf2a
XM_039801786.1 mRNA downstream 3972 8463382 ~ 8501162 (-) False wipf2a
XM_039801767.1 mRNA downstream 3972 8463382 ~ 8501162 (-) False wipf2a
XM_039800227.1 mRNA downstream 47787 8449938 ~ 8457347 (-) True LOC120558891
XM_039800275.1 mRNA downstream 60901 8434631 ~ 8444233 (-) True LOC120558917
XM_039817201.1 mRNA upstream 1920 8512245 ~ 8517252 (-) True c1h6orf120
XM_039811044.1 mRNA upstream 9610 8519935 ~ 8562298 (-) True npepps
XM_039803243.1 mRNA upstream 64908 8575233 ~ 8606773 (-) True gpr179
XM_039811772.1 mRNA upstream 221743 8732068 ~ 8739288 (-) False si:dkey-23f9.4
XM_039811764.1 mRNA upstream 221743 8732068 ~ 8739288 (-) True si:dkey-23f9.4
TU4012 other downstream 3993 8483712 ~ 8501141 (-) False wipf2a
TU3971 other downstream 295599 8207252 ~ 8209535 (-) False G2840
TU3972 other downstream 295599 8207252 ~ 8209535 (-) False G2840
TU3973 other downstream 295599 8207252 ~ 8209535 (-) True G2840
TU3830 other downstream 741186 7739824 ~ 7763948 (-) True G2752
TU4151 other upstream 248324 8758649 ~ 8767973 (-) True G2938
TU4231 other upstream 395347 8905672 ~ 8908086 (-) True G3011
TU4635 other upstream 1015218 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 1039656 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 1515945 10026270 ~ 10042004 (-) True G3373

Expression Profile