RNA id: TU417


Basic Information

Item Value
RNA id TU417
length 243
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G310
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1354136 ~ 1354378 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatttccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatttccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaatgggtgaattaagggtttatttcaaccaaaccagagtggtgattgttggaacagtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416 lncRNA upstream 2086 1351520 ~ 1352050 (+) True G309
XR_005640481.1 lncRNA upstream 50601 1302713 ~ 1303535 (+) True LOC120566887
TU396 lncRNA upstream 231975 1116624 ~ 1122161 (+) False G292
TU253 lncRNA upstream 341267 934177 ~ 1012869 (+) False LOC120566368
TU383 lncRNA upstream 385616 967330 ~ 968520 (+) True G281
TU430 lncRNA downstream 28752 1383130 ~ 1383452 (+) True G321
TU431 lncRNA downstream 30079 1384457 ~ 1384658 (+) True G322
TU426 lncRNA downstream 46501 1400879 ~ 1403020 (+) True G317
TU434 lncRNA downstream 56915 1411293 ~ 1411514 (+) True G325
TU442 lncRNA downstream 87174 1441552 ~ 1562975 (+) False G329
XM_039813014.1 mRNA upstream 6942 1341624 ~ 1347194 (+) True LOC120566495
XM_039813000.1 mRNA upstream 86871 1260019 ~ 1267265 (+) True LOC120566489
XM_039813090.1 mRNA upstream 96032 1252768 ~ 1258104 (+) True LOC120566570
XM_039813152.1 mRNA upstream 118163 1227358 ~ 1235973 (+) False LOC120566607
XM_039813377.1 mRNA downstream 9579 1363957 ~ 1369052 (+) True LOC120566750
XM_039813388.1 mRNA downstream 35391 1389769 ~ 1399264 (+) True LOC120566759
XM_039813398.1 mRNA downstream 35391 1389769 ~ 1399264 (+) False LOC120566759
XM_039813454.1 mRNA downstream 85462 1439840 ~ 1446325 (+) True LOC120566800
XM_039813355.1 mRNA downstream 225936 1580314 ~ 1581696 (+) True LOC120566732
TU237 other upstream 41705 1311867 ~ 1312431 (+) True G149
TU241 other upstream 135051 1193661 ~ 1219085 (+) True G151
TU260 other upstream 195577 1144654 ~ 1158559 (+) True G165
TU395 other upstream 209723 1116624 ~ 1144413 (+) True G292
TU294 other upstream 335098 1016907 ~ 1019038 (+) True G199
TU486 other downstream 181837 1536215 ~ 1536697 (+) True G355
TU495 other downstream 239444 1593822 ~ 1879546 (+) False G363
TU503 other downstream 424608 1778986 ~ 1836460 (+) False LOC120566853
TU525 other downstream 525240 1879618 ~ 1892664 (+) False G369
TU983 other downstream 952907 2307285 ~ 2312087 (+) True G714

Expression Profile