RNA id: TU4285



Basic Information


Item Value
RNA id TU4285
length 518
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G3053
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9126183 ~ 9126700 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tagcagttatgttgttgccacagtgaggctttgtttgggagctcgctctcagggactctgaatagctgcagcacagcacagctgacagattcagcaggtgacaggctcgttagcttgattacagacatcaaagcaagtaaacattcccaggccatggttaccatgacaacactttcacagacacacacccagatactacaggcagtaatatgaacagtagtctatacagatactacaggcagtaacatgaacagtagtctctttggccttccacttctgtccgtctgtcttctctgtctgtccatcctctttctgtcctctttcttctttcctctttctgtcttctttcctctttctgtcctctgttctctttctgtcctctcgctctcttttctctttcctctttctgtcctctgttctctttcctcttccttaCCTCTTcgttcctctctgtcctctttcttctttcttctttctgtcctctttctgtcctttcttctttcctctttctgttctct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4282 lncRNA downstream 2172 9121713 ~ 9124011 (-) True G3052
TU4283 lncRNA downstream 2172 9122785 ~ 9124011 (-) False G3052
TU4284 lncRNA downstream 2172 9122785 ~ 9124011 (-) False G3052
TU4262 lncRNA downstream 98239 9027007 ~ 9027944 (-) True G3036
XR_005639319.1 lncRNA downstream 139573 8971674 ~ 8986610 (-) True LOC120559564
TU4276 lncRNA upstream 26550 9153250 ~ 9153699 (-) True G3048
TU4277 lncRNA upstream 29239 9155939 ~ 9160172 (-) True G3049
TU4631 lncRNA upstream 280971 9407671 ~ 9496783 (-) True G3309
XR_005639308.1 lncRNA upstream 347986 9474686 ~ 9476015 (-) True LOC120559537
TU4642 lncRNA upstream 347994 9474694 ~ 9476011 (-) False LOC120559537
XM_039811212.1 mRNA downstream 114605 9006939 ~ 9011578 (-) True LOC120565400
XM_039801061.1 mRNA downstream 171341 8943845 ~ 8954842 (-) True LOC120559379
XM_039800053.1 mRNA downstream 207039 8912382 ~ 8919144 (-) True dla
XM_039794380.1 mRNA downstream 268478 8818287 ~ 8857705 (-) True myom2a
XM_039800886.1 mRNA upstream 39288 9165988 ~ 9246905 (-) True lcor
XM_039801172.1 mRNA upstream 178247 9304947 ~ 9331554 (-) True hoga1
XM_039801145.1 mRNA upstream 270130 9396830 ~ 9412357 (-) True LOC120559457
XM_039801126.1 mRNA upstream 350980 9477680 ~ 9489740 (-) True LOC120559444
XM_039801132.1 mRNA upstream 350980 9477680 ~ 9489641 (-) False LOC120559444
TU4231 other downstream 218097 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 358210 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 625042 8483712 ~ 8501141 (-) False wipf2a
TU3972 other downstream 916648 8207252 ~ 8209535 (-) False G2840
TU4635 other upstream 398843 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 423281 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 899570 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 1772858 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1850943 10977643 ~ 10993201 (-) False nacc1b

Expression Profile