RNA id: TU4631



Basic Information


Item Value
RNA id TU4631
length 899
lncRNA type read_through
GC content 0.41
exon number 3
gene id G3309
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9407671 ~ 9496783 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atttaaaaaaaaaaaaaaaaatagctcctgAACTTTAGATTCTTTGAGCAAACTTTTTTTCCTGAGATCTATTAAGCGCGGTCTGCTCTAGTTCACAGCAGGCGAGGACACGTACACCTAGGAGGCAAATAGTCTTGATTTCTAGACGTTGGAGAAATGTCCGTCAATACCCATCGGTAAGAGAAGAGCCTCGAAGGGGTTGACGGGGAGTTCCCGTTTTCCTAAAGTCGCCCCACTAAATTATGACGctttttaactatttttcatTTTAGTGTTCAACTTGACAAACTCCCTCTATTGGCTTTCAAAAAGCTTCGTGGAGGGCAAGGCACAGTGAAAGCAAAGTTGCATTTGGCCATTTGATCAAAGAAATCCCCTCCACCACCGATTGTTAGCGTTCAGACTTTGTTTTGGCTCTGAACTCAAGTACGTTGgattaagaaaaaaagagtgactCTGAAGTTAAAGTGCTGACTTTGAGCTTTAATTTGAGGGCGTTTACATTCACTTCCAATGAACTGTGTAGCAGTTTTGTCATACATACCCGCcaaaaggattaaaaaaaggGCAAGCAATCCTACATTGGTGGCAAAGTCAGCACTTTAACCTCATAGTTACAAATCCAGTGCGTTTGAATACAGAGCCGAAAGAAAAGACGAAAATTCATCACAATCCAAGTTCTAAGAACTGCGCCATGAGCTGAGTTACACCCCTCTCTGAAATGCTCATGCTGCACTTCTCACTTCAAGGTATTATCACCATGATAAATTCTGACCACGTGGTGGCGTACAGTAGACTGggtaaactagggctgggcgatatggagaaaatcaaatatcacgatatttttgaacaaatacctcgatatcgataccacaacgatgttgtagtgttgacta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU4277 lncRNA downstream 247499 9155939 ~ 9160172 (-) True G3049
TU4276 lncRNA downstream 253972 9153250 ~ 9153699 (-) True G3048
TU4285 lncRNA downstream 280971 9126183 ~ 9126700 (-) True G3053
TU4282 lncRNA downstream 283660 9121713 ~ 9124011 (-) True G3052
TU4637 lncRNA upstream 11821 9508604 ~ 9526388 (-) False G3312
TU4644 lncRNA upstream 21522 9518305 ~ 9605820 (-) True G3315
TU4634 lncRNA upstream 78120 9574903 ~ 9587986 (-) True G3312
TU4636 lncRNA upstream 78120 9574903 ~ 9640514 (-) False G3312
TU4678 lncRNA upstream 142258 9639041 ~ 9652295 (-) True G3346
XM_039801172.1 mRNA downstream 76117 9304947 ~ 9331554 (-) True hoga1
XM_039800886.1 mRNA downstream 160766 9165988 ~ 9246905 (-) True lcor
XM_039811212.1 mRNA downstream 396093 9006939 ~ 9011578 (-) True LOC120565400
XM_039801061.1 mRNA downstream 452829 8943845 ~ 8954842 (-) True LOC120559379
XM_039800053.1 mRNA downstream 488527 8912382 ~ 8919144 (-) True dla
XM_039800965.1 mRNA upstream 28478 9525261 ~ 9567845 (-) False LOC120559295
XM_039800931.1 mRNA upstream 28478 9525261 ~ 9567845 (-) False LOC120559295
XM_039800973.1 mRNA upstream 28478 9525261 ~ 9567247 (-) False LOC120559295
XM_039800939.1 mRNA upstream 28478 9525261 ~ 9567247 (-) False LOC120559295
XM_039800956.1 mRNA upstream 28478 9525261 ~ 9567247 (-) False LOC120559295
TU4231 other downstream 499585 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 639698 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 906530 8483712 ~ 8501141 (-) False wipf2a
TU3972 other downstream 1198136 8207252 ~ 8209535 (-) False G2840
TU4635 other upstream 28760 9525543 ~ 9549898 (-) False G3312
TU4646 other upstream 53198 9549981 ~ 9567228 (-) False LOC120559295
TU4721 other upstream 529487 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 1402775 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1480860 10977643 ~ 10993201 (-) False nacc1b

Expression Profile