RNA id: TU47


Basic Information

Item Value
RNA id TU47
length 956
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G27
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 184232 ~ 185239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cactcacacacacatcaacacacagagagagacacacacacacacatcaacacatcattttctgtgtgtctgtccatcAATCATCTCTCAGGTTTAAATGAATGATGTCATACATGTGTTTGATTCCTCTGTCCGTCTCTGTGGAGCAGTGCATTATGGGAAGGCACAGCGTGACGGCAGCAGGTAACGATGGACCCAGCGTGTCGTAGACAGTAGTGACGGTGACACCAGCAGGAAACATCAAAGTAGCGGCAAAAAATCCtgacaaaatgtccaaaaatagTCCggcaaaaactgtgaaaaaacctgacaaaatgtcaaataaaatggcaaaaatagTCCGGcaaaaactgtgaaataatCTGACTAAATGTCCAAAAAATTGGCAAAAATAGCCTGgcaaaaactgtcaaaaaacctgacaaaatgtcaaataaaatggcaaaaatagTCCGgcaaaaactgtcaaaaaacctgacaaaatgtcaaaataaaatggcaaaaatagTCCGGcaaaaactgtgaaataatctgacaaaatgtcaaaaaaaatggcaaaaatagCCCGGcaaaaactgtgaaataatctgacaAAATGTCCAAAAAATTGGCAAAAATAGCCCGGcaaaaactgtgaaataatCTGACAAAATGTCCCAAGAATTGGCAAAAATAGCCCAGcaaaaactgtgaaataatCTGACAAAATGTCCCAAAATTGGCAAAAATAACCCGGCAAAACTGTGAAATAATCTGACAAAATGTCCAAAGAATTGGCAAAAATAACCTGGcaaaaactgtgaaataatCTGACAAAATGTCCTAAAAATTGGCAAAAATTACCCGCAAAACTGTGAAATAATCTGACAAAATGTCCAAAGAATTGGCAAAATAACCTGGCAAAACTGTGAAATAATCTGACAAAATGTCCAAAGAATTGGCAAAAATAGCCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25 lncRNA upstream 110563 23490 ~ 73669 (+) False G11
TU16 lncRNA downstream 20612 205851 ~ 214248 (+) True G6
TU61 lncRNA downstream 30222 215461 ~ 264819 (+) True G30
TU62 lncRNA downstream 30222 215461 ~ 279466 (+) False G30
TU63 lncRNA downstream 30756 215995 ~ 216362 (+) True G31
TU12 lncRNA downstream 44125 229364 ~ 309093 (+) True G2
XM_039802163.1 mRNA upstream 1929 158391 ~ 182303 (+) True LOC120560058
XM_039815494.1 mRNA upstream 34390 149439 ~ 149842 (+) False fbxo3
XM_039801942.1 mRNA upstream 119071 854 ~ 65161 (+) False LOC120559874
XM_039802184.1 mRNA downstream 15174 200413 ~ 224596 (+) False LOC120560073
XM_039812604.1 mRNA downstream 106013 291252 ~ 319824 (+) False rrp36
XM_039812597.1 mRNA downstream 111618 296857 ~ 319824 (+) False rrp36
XM_039812587.1 mRNA downstream 118988 304227 ~ 319824 (+) False rrp36
XM_039812578.1 mRNA downstream 124530 309769 ~ 319823 (+) True rrp36
TU13 other upstream 7170 175133 ~ 177062 (+) False LOC120560058
TU6 other upstream 33252 70004 ~ 150980 (+) True fbxo3
TU56 other downstream 25996 211235 ~ 214550 (+) True LOC120560073
TU279 other downstream 292732 477971 ~ 481890 (+) True G184
TU271 other downstream 398151 583390 ~ 598207 (+) True G176
TU268 other downstream 817187 1002426 ~ 1009733 (+) False LOC120566414
TU294 other downstream 831668 1016907 ~ 1019038 (+) True G199

Expression Profile