RNA id: XR_005639309.1


Basic Information

Item Value
RNA id XR_005639309.1
length 1267
lncRNA type intronic
GC content 0.38
exon number 5
gene id LOC120559540
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9898896 ~ 9902061 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTCGGAAAAAAGTTGCAGTTGGTGTTTGGTATCTAATATGGAAAAGATCCTGAAAAATTGCTTCGTTGATGAGTTGTGCTCCTGTCTTGATAAGACCTACTCAAAAAAAGGTCCTGGCTGGGATAGCCTTTGTCAACTCCCTACGTATTGATGTGTTATAGCTGGACTGCGGAGCTTTCATGTGATGGAGGCAGAATTTgtcttactactactactactccccTTCTCTAAAAGTTCTTTACACAACTTGACCAACGCACTGAGCAGCTCATGAAAGTGTTGAACAAAGGAGGCTCTGCAGGGAGGAAAATCAGGATCATTATGGCCCCAATGACACAGGAAGCCGAGGGAGCTTGAGAAGTCACCTTTGGTATCTACAGCATCGATGTTAAGGGAGGTGATACCGCCACTCCTCCAGCCGATGTTGGAATTGTGATTCAGGGTGTTGAAGTTCTGCACGACTTGAGAGACTTTGCCTCTGCATGTGCCCTGAGTTATCCTAACAGACTGAAAGCCTTCTTTGAATTACTTCAAAAGTTCTTCCTTCAAATGGATGCTTGCAGACTCTCAACCAAGGTACAGCTGCTCATTAACTAACTGTACAAATGAGACAATCACTGATTTGGATGCTGAATGTTCCATAGAACAGGAGAAATATTTTGGGccgaaactgaaaaaaattatCTGTTTGAAAATAGAGCAGAGAAACTACACTTGAGGAAAACAACCAATTTCTTTGCAAACTTTTGAAAAACTTATCATACATGAAAAGTGGTAGTTGAGTGGCACTACTAGAGAAGTGATGTAGAATTGAGAGACCATGCTGCGCAAAAACGGTTGATATATAACTATGGCTATTTTGTGGATGTTTTAACACTAAGCTGCATCAAAAACAACTGCAAGGAAGTTCAATCATCAGACCATCTTAACCATCGTTAAAGAAATCCTACTTTAGAGTAGATGTTTGTTAAAGTGTTGCCACTGAAAACTTTATTTTAGATGTTAAGGCTGTTAGATGGAGAGACTATTATTTTGTAAACAAATTTGAAAACTAAaaagtattatttattaaaccatAAAAAGTGAGTTATTTATTAAAGTgtgaattatttatatatttgctgTCAACCGATCGACTAATATTTACAGCTGTAATTCCATGTGTTACAAATGTGTACATGCATTGAAATGTTAGTTTATAGAATGGCACCAAAATGTTACTGAATCACTGCTGTGTTGATGAATAAAGGAAATAAGAAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4738 lncRNA downstream 23083 9872577 ~ 9875813 (-) True G3387
TU4737 lncRNA downstream 28809 9869700 ~ 9870087 (-) True G3386
TU4727 lncRNA downstream 33948 9864082 ~ 9864948 (-) True G3376
TU4718 lncRNA downstream 56849 9840590 ~ 9842047 (-) False G3373
XR_005639329.1 lncRNA downstream 102906 9793232 ~ 9795990 (-) True LOC120559598
TU4748 lncRNA upstream 19263 9921320 ~ 9980998 (-) True G3396
TU4749 lncRNA upstream 24615 9926672 ~ 9947531 (-) True G3397
TU4681 lncRNA upstream 92640 9994697 ~ 10000627 (-) True G3347
XR_005639331.1 lncRNA upstream 94818 9996875 ~ 9997585 (-) True LOC120559605
TU4761 lncRNA upstream 119568 10021625 ~ 10041435 (-) False G3406
XM_039801275.1 mRNA downstream 310930 9578442 ~ 9587966 (-) True atpv0e2
XM_039800956.1 mRNA downstream 331649 9525261 ~ 9567247 (-) False LOC120559295
XM_039811752.1 mRNA upstream 270028 10172085 ~ 10181987 (-) True LOC120565745
XM_039814745.1 mRNA upstream 595266 10497323 ~ 10571770 (-) True LOC120567750
XM_039814756.1 mRNA upstream 595268 10497325 ~ 10555968 (-) False LOC120567750
XM_039814763.1 mRNA upstream 595268 10497325 ~ 10553895 (-) False LOC120567750
XM_039814729.1 mRNA upstream 677228 10579285 ~ 10624015 (-) True LOC120567745
TU4646 other downstream 331668 9549981 ~ 9567228 (-) False LOC120559295
TU4635 other downstream 348998 9525543 ~ 9549898 (-) False G3312
TU4231 other downstream 990810 8905672 ~ 8908086 (-) True G3011
TU4151 other downstream 1130923 8758649 ~ 8767973 (-) True G2938
TU4012 other downstream 1397755 8483712 ~ 8501141 (-) False wipf2a
TU4721 other upstream 124213 10026270 ~ 10042004 (-) True G3373
TU4974 other upstream 997501 10899558 ~ 10905235 (-) True G3586
TU4966 other upstream 1075586 10977643 ~ 10993201 (-) False nacc1b
TU5319 other upstream 2740215 12642272 ~ 12659962 (-) False c1qtnf6b
unassigned_transcript_53 other upstream 2958227 12860284 ~ 12860355 (-) True trnac-gca

Expression Profile