RNA id: TCONS_00006480


Basic Information

Item Value
RNA id TCONS_00006480
length 306
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id XLOC_003304
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12493872 ~ 12494177 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGGGAGAGCACATCGTCGTCCGACCAATGTTTACTGGGAAGCTACTGGGAGGCTGAGGCTGCGGatcgcttgagctcagggcttctggACTGCAGTGGACTATGTCGATCGGGTATCCGCACTAAGTTCGGTATCGATATGGTGCTCCCGGGTGAGCTCGGGACCGCCAGGTCGTTTAAGGAGGAGTGAACCGGCCCAGGTCGGAAACGGAGCAGTTCAAAGCTCCCGTGCCGATCAGTAGTGGGATCGTGCCTGTGAATAGACACTGCAGTTCAGCCTGAGCGACACAGAGAGATGCTTACt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008393 lncRNA upstream 26812 12466766 ~ 12467060 (+) True XLOC_003302
TCONS_00006458 lncRNA upstream 327082 12166486 ~ 12166790 (+) True XLOC_003282
TCONS_00008571 lncRNA upstream 590362 11891591 ~ 11903510 (+) False XLOC_003278
TCONS_00008394 lncRNA downstream 28593 12522770 ~ 12523029 (+) True XLOC_003307
TCONS_00006494 lncRNA downstream 223932 12718109 ~ 12718402 (+) True XLOC_003319
TCONS_00006501 lncRNA downstream 250458 12744635 ~ 12752361 (+) False XLOC_003321
TCONS_00008574 lncRNA downstream 288038 12782215 ~ 12785059 (+) True XLOC_003322
TCONS_00008395 lncRNA downstream 385550 12879727 ~ 12880871 (+) False XLOC_003325
TCONS_00006460 mRNA upstream 309329 12175162 ~ 12184543 (+) False XLOC_003284
TCONS_00006461 mRNA upstream 309612 12176327 ~ 12184260 (+) True XLOC_003284
TCONS_00006456 mRNA upstream 401694 12052791 ~ 12092178 (+) True XLOC_003280
TCONS_00006455 mRNA upstream 514018 11974708 ~ 11979854 (+) True XLOC_003279
TCONS_00006454 mRNA upstream 643877 11842724 ~ 11849995 (+) True XLOC_003277
TCONS_00006495 mRNA downstream 225767 12719944 ~ 12728353 (+) False XLOC_003320
TCONS_00006496 mRNA downstream 225811 12719988 ~ 12727230 (+) False XLOC_003320
TCONS_00006497 mRNA downstream 225994 12720171 ~ 12727529 (+) False XLOC_003320
TCONS_00006498 mRNA downstream 226131 12720308 ~ 12727651 (+) True XLOC_003320
TCONS_00006499 mRNA downstream 250398 12744575 ~ 12770546 (+) False XLOC_003321
TCONS_00006479 other upstream 18170 12475442 ~ 12475702 (+) True XLOC_003303
TCONS_00006478 other upstream 52920 12440656 ~ 12440952 (+) True XLOC_003301
TCONS_00006477 other upstream 61607 12431978 ~ 12432265 (+) True XLOC_003300
TCONS_00006476 other upstream 87857 12405730 ~ 12406015 (+) True XLOC_003299
TCONS_00006475 other upstream 105025 12388547 ~ 12388847 (+) True XLOC_003298
TCONS_00006481 other downstream 8374 12502551 ~ 12502847 (+) True XLOC_003305
TCONS_00006482 other downstream 22756 12516933 ~ 12517229 (+) True XLOC_003306
TCONS_00006483 other downstream 42107 12536284 ~ 12536580 (+) True XLOC_003308
TCONS_00006484 other downstream 47862 12542039 ~ 12542334 (+) True XLOC_003309
TCONS_00006485 other downstream 73810 12567987 ~ 12568283 (+) True XLOC_003310