RNA id: TU5715


Basic Information

Item Value
RNA id TU5715
length 3820
RNA type TUCP
GC content 0.41
exon number 2
gene id G4168
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 13531753 ~ 13567266 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agatttatgcatttatttcatattagtTTTAACAATGTTTGTACAAAAATAAACCCAAAGCAATATGAAAATGTTTCTGAACTGTCAAAAATAATACCAATAACTGGCctccaaaatgaaaacaagtgtcAAGGGGTGGGTACCGGTCATTTCTTAAAAATTGGTATTTAAAACATTGTTTGCAAATCGGTATCAAAATCATAGTATACAATTTTtcgaacgatacccagccctacaacATTATTTGAAATCTGAAGACAAATAATGGTTTGCATATACCGTTATCCCTTTAATAGCTTTGTGTAATGGCATTCCCTTTAAGCGTAATTTATAGTTGACGACTTGCTATTTTCCATAAATGTTTTAATTCTGGGtcactgcatattttactataacaaaaatatgtaaaacaatGTTTTAGTGAGTCAGtgtacacacatatgcacacacacacacgctcatgaCTGCACTTCCTGCTAGCAGCAAtaacaggctgtgtgtgtgtgtcacacagaGCGCATGTCtccaacatacacacatacccgAGTAAAAAGTCAGAGGAAATGTGGCAAGGAGCATGACCCACTCTAACCACCAGTACACATCTGGACTGGTTTAAgactgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagttggccCTATAAACTAAGTAACGATTGCATAAGACAGCAGGGTAATTCCCCACAAGAAATCTGTTTATAATACCAGGCAGAGTGACCATTATGGCCTCGTTTTATGAGATCTGAGGAGTTTGAGCGAGGTCATTCCTAGATGTTTCGCTAAAGTTTGACTCATGGAAAGTTTGACATCTTGGCTGGATAGATGCACATATGTATGGAATTAGATTTGTGTCTAAAATGAGTGCATGACCGGACATATCTTGAGATTATTTGCACGCACAAAAATGatattttgttttgatattatcAAACAAAGACcaatagtgacaaaaaaaagccTATCAAAATTTACCTACTCCAATTTTGAAATTGTGACACTGTAACACAGTCAATTTAAGCTATTGTTTTCTGAATCAAATAACTTTTCTGTAGCTTAGCTCTTTAATTGATCTAGTAGTGCGGTAACATCCACACAAGCTACATTTAGCTTTACTCAAACGAGGTGAAGCTCAAGTGCAGTGGAGACTAAAACGGCTGAGGATCACCAACACCAGCACCAAACACGGACTGTCCagcaaatacaaaaaacaaacaaaacaaaaaaaattactttgcACACCCGAATCAAGCCGATGAATTTGAACTCTTTCAGTTTCTATGTAAAAGGTGAAATGTGTAATGGTAAGTGGCTCTATATGACTTTCTGCAGGGACGCCTATTTTACCCGAAGTAGCTACTTTATTCACCTGCTGATTATAAAATAACTGAGGTTGATGTTGACAAGTTAAAAATATAGTGAGAGGAAAAAAGGTGACAGTTCTGAAACTGCATTCTTCCTTAGTGCTCAAATCCCACGCTCACTATGAGATTTAGTTTGACTGGTTAAAGGTGTGAGAGACAGGAACTGAAAGAAGAAAACCAGACCTATATGATCAGACAATAGATACAAGGTATGTGACAGAGCAGCAGTTTATAACAACATCTGCCGTCACTTCAGCCACAAGGTAACCCACAGGCTCAGTGTATTGAACgtgcaaggttttttttttttttttttttttttttttggagctgTAAGAGCCGAGTATGTTCTCTGCTCTTGTTGGACCATTATATTCATGCAAAGTATGTTGCTTTTTGTAATTGACAGTGCTTAAAGAAATAATATTGTGATTTCTTAGGCTACACAGAGCTCAACAATGTGTGTTGCAACAGAGCTGCAACAAATAATCAACAGTTATATATTTTCTAACTAAAACAAGTCAACACAGTTATACTGCAGGACAATAGAGTCAACAGTTGGAGGTTCTATATTCAACATAGGCTGCTTCTCAAGTcacttatttgatagctcctcgcaCAAACCGGAGTTGTTCTGTCCTTCCAacgtgaaggccgtctcaaagctcttattcctgccgAAGAATCGCGGCGTGATCtccgaggagctatgagcgaggatacacaAGGGCAGCATTCCTGTAAGCCGTGCCTCTAAAAGCCGTTGCTAAatcctcgtttcctctctcctcgcatGATTTCCGCGCGTCTCTCCCGTGCTTCCTTGGTGGGatggactaagacgcgaggaagggaagcaaCTGAAGGAAACATGGATGCAATTTAAGAACATAGGATGTACCCATGGATGGATGTACCCATGTTGCAATCATGTACACCTACAGAGCACCTAAAAAGCAGAAGCTTGTTTGTTTATATTTGGTCAAAACCGCAAGTTAAAGCAGGACAGACAAAGGTGGATCACTAGGATTGTCCACGCAACAATCCACTATGATTGTTGCGTATGACTTTCAAATCATAAACTACCACATCTGCATCTAATGATGATGCTATTAGTGAATCTCCTTACAATAGAATACAATAATACCTATCAGGTACAATCCTTTTTGATATGAAAGGCTCAtctaattttagttttttaatgatttttgcaGGAAAAGTGTGGAGTGTAAACTGATTTTTAACTGGATTTTTGGACTGGAGTTACGGAGCGACCTTATCGGTCATTCAGAGTTTCTGTTAGCGAGTaagtgtttctggccacctagcaatgtaagtccaatattcacacaaatgctccactgtgttcaccatATAGTCGCTCACTGTGTCTGTCGGCTGTTGGTGCTGAACAGCTATGGACATTGAGTTTTAGGAGCTCCTTTACAGAAAACCGCTGCCTGCAGTGGCTGGAAAAAAGAGCGGttagagtgaaccaaaacagtcaAGTTGTGGGTCAAACttaacaatgagctgaaactcactATAAAGCTTGGTAAAAccgaggggagctgcagatttGGGTGATAAGGTTAATTTCATTTGCTACATTGTTATTGTGATaacaaattataatatataataaccaaataaaataatcaattatATCTGCTTTAAGTGAACCAAGTAAAAACataccttttaaaaaaaggtacGGAGTGGTTTAGCCTATTTTTTTATATGATCATTTCAAATAATTCATATTTCACTTgccttcttttttaaataaaaactttttccttctttttttttgggggggcgggCACATTTAATGTAACCTTAAGTTGTCAAGTCGGCCAAGTTGTCACAGCTCTCAAACCGTTTGAGTGGTGGTTGTCACGGTCGTACTGTATATGCTAAACAGATAATCATGGTCACCAGATCAGTTTACAGTCAGTGTGCGTTTAGACAAgtggttgttgtgtttgtgactgCTGTCGTCGGCTCCGTTGCTCTCGGACAGTACCTCTTGCTCCAGGGTGTTAAAGTAAACGCCAGAGGCGCCCTTGCGGCTGCCCCGCCGGCACAGGCAGCACAGGATCTCCTTGAAGGTCCTTCTCATGTCAGTGTCCCTGAAGGAGTAGATGATGGGGTTGAAGAAGGAGTTGCACTCGGCCAGGACCAAGAAGTACTTCTCAAAGCGCAGCACCTCACACACTTCACAGCCCAGACCGTCGAGCAGCAGGATGACCAGGCCGGGCGCAGCACCTCACACACTTCACAGCCCAGACCGTCGAGCAGCAGGATGACCAGGCCGGGCGTCCAGCAGAACACAAAACAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5634 lncRNA downstream 39756 13487920 ~ 13491997 (-) True G4115
TU5571 lncRNA downstream 259579 13195046 ~ 13272174 (-) True G4066
TU5521 lncRNA downstream 374536 13089192 ~ 13157217 (-) True G4032
XR_005640641.1 lncRNA downstream 378907 13151720 ~ 13152846 (-) True LOC120567935
XR_005640640.1 lncRNA downstream 380130 13148240 ~ 13151623 (-) True LOC120567932
XR_005639135.1 lncRNA upstream 197927 13765193 ~ 13767856 (-) True LOC120558530
TU5895 lncRNA upstream 451636 14018902 ~ 14021031 (-) False LOC120558548
TU5892 lncRNA upstream 451684 14018950 ~ 14021031 (-) False LOC120558548
TU5951 lncRNA upstream 478094 14045360 ~ 14045719 (-) True G4354
TU5963 lncRNA upstream 488177 14055443 ~ 14056457 (-) True G4359
XM_039799369.1 mRNA downstream 57194 13428440 ~ 13474559 (-) True LOC120558389
XM_039816259.1 mRNA downstream 116080 13408733 ~ 13415673 (-) False LOC120568624
XM_039816252.1 mRNA downstream 119767 13408733 ~ 13411986 (-) True LOC120568624
XM_039809617.1 mRNA downstream 127608 13393147 ~ 13404145 (-) True LOC120564537
XM_039809606.1 mRNA downstream 127612 13393664 ~ 13404141 (-) False LOC120564537
XM_039799493.1 mRNA upstream 31464 13598730 ~ 13607821 (-) True soul5l
XM_039799341.1 mRNA upstream 43033 13610299 ~ 13623167 (-) True LOC120558365
XM_039799526.1 mRNA upstream 63328 13630594 ~ 13632316 (-) True LOC120558503
XM_039799220.1 mRNA upstream 83484 13650750 ~ 13658617 (-) True LOC120558275
XM_039814145.1 mRNA upstream 219943 13787209 ~ 13805843 (-) True micall2b
TU5471 other downstream 491519 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 491519 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 491519 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 503360 12991667 ~ 13028393 (-) False LOC120560419
unassigned_transcript_56 other downstream 665714 12865968 ~ 12866039 (-) True trnac-gca_3
TU6167 other upstream 1144937 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 1333884 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 1859278 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 2778504 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 4143380 17710646 ~ 17713898 (-) True LOC120560175

Expression Profile