RNA id: TU5892


Basic Information

Item Value
RNA id TU5892
length 2016
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC120558548
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14018902 ~ 14042510 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaagagagggagaagaagaggaggaggtgaaagagaatggagaggaagagggggaggagactggagaaagagagggagaagaagaggaggaggcgaaGGAGAacggagaggaagagggggaggagactggagaaagagaggaagaagaagaggaggaggcgaaGGAGaacggagagggagagggggaggagactggagaaagagatggagaagaagaggaggaggcgaaGGAgaatggagaggaagagggggagcATGGAGAGGACCAAGTAGAAGAAGACGGAGGGCAGACCGATGAAGGGAATGATgcggtggtggaggaggaggagactaaagaagaggaggaagagaatgaGCAACATCaggaaggagaagaggaggaagacgaAGGGGAAGGTGAGAATGGTGCAGAAAATGAAGACATAGAAGGGGAGTTAGAGGAAGAAAAtgaagagagggaaaaagaaagtgagggggaagaggaaaaggaaaacGAGGAGGGTGAAgtggaggaaaaagaggagggagagatggaggagaaagaagaagaggaggcagCAGAGCTGGAGGGAAATGTAGAAGAAGAGGGCGAgacagaggagaaagaagaggaggcGGCAGAAACGGAGGACAAAGTTGAGGTCGGAGAAACAGCAGATGtcgaagaggaagaggagaaaggagagctggaagaagcagaagaggaggaggcgCCAGTTGAGGATGGAGCtggaaaagaggaagaagatgaagaCGAAAGTTAGTTGGGTGCAAAAACATAAATTAACAGGCTCAGCGAAGAAAGGTTAAcgagagattaaaaaaaaaaaaaaaaaaaaaaaaagaacggaaATGGAGCCGGAAAAAGGGCTTCGACACATGGCATTGAGACTGTCAGGGAGGACGACGAAGAGCTGAAGATGCACTTCTTTCCAGATAACGTGCTCCGACCACTTGATCAGCTGAAGGCTCGACTACAGACGTCTTCAACAAAAACGTCCCAGCTCACAGGCGGACAGCAAGAGCACCGGACACAAATCCCAAACCTCCGCCGGAGCACAAGCCTTCCCGAACAGCCAGATCGTTGCGGCGTCTTGATCGACTGGTAGTGCGAGAAAGACTTCACGTCTTCGTCACCCAGTGTCTGTACATCCATCACTGCCGTAGGGAATACAAACGGGGGGACGTCAAAAGGGGGTGAAACCTGTTCTACCTTCCTTTTTTGTAGCTcctgaaattaaaatgaaaatgaaatgcgCACATGCAAATAAGTGCGCGTCCGTTCTCCCGATCTCATGGACTATACTACCCATCATCTCTCTGTCACTGTCTCGTTTATGAGGAAGatacccaccacacacacataacacacacacacacacacacacacacacacacacacacacagaccaacaaCTGTTCAAAGAATGTCAACTTCCTCTTCTTTTgtcagaaaagagaaaaaaaaaaataagtctgGAAAGTGTCTGTCGTCTTATATTTACTACATCTTTCCACTTGTGAACAGGATGCTGAGAACAGATTTGGGCTCTGGTCTAGGAACAGTTTAACCTCCTCACATACTAACCTTAAAGCAACAAAATGCTGGATTTCTGAATAATATCCGGACCGTTGTGTCAAAGTAGAAACTTTCGCAGTCCGGCTCAAAAGGCTGACCTGTTGTACGTGTCGATGTCAGTTcatgtttaaaagaaaaaaaaaacacccagtaTTCATCCCTTCACGACAGTTTCACCACTCCCAGACTGTGAGTTTGATTCCCGGGTGAATCGTGCCAAACTGACCCACGACCAGCACTGAGCAATTAAGCCTTCCTTCAAACAAGATGGCTACTTGTCCATGAAGCAATGAACTGTGGGACCAGGTTAACGGGTGTGACGGTCTTCCACAAAtcccttttttctttgttttgtttttgtaaaaatggtATTTGGCACTTTATCTAACACCCCTGTTACATATATGTACATaataaacatgtattttaatCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639135.1 lncRNA downstream 251094 13765193 ~ 13767856 (-) True LOC120558530
XR_005639134.1 lncRNA downstream 482702 13520001 ~ 13536248 (-) True LOC120558524
TU5634 lncRNA downstream 526953 13487920 ~ 13491997 (-) True G4115
TU5571 lncRNA downstream 746776 13195046 ~ 13272174 (-) True G4066
XR_005640641.1 lncRNA downstream 866104 13151720 ~ 13152846 (-) True LOC120567935
TU5951 lncRNA upstream 24329 14045360 ~ 14045719 (-) True G4354
TU5963 lncRNA upstream 34412 14055443 ~ 14056457 (-) True G4359
TU5962 lncRNA upstream 34668 14055699 ~ 14056457 (-) False G4359
TU5970 lncRNA upstream 46817 14067848 ~ 14071287 (-) True LOC120558581
XR_005639154.1 lncRNA upstream 49816 14070847 ~ 14071547 (-) False LOC120558581
XM_039814266.1 mRNA downstream 35320 13959135 ~ 13983630 (-) True LOC120567316
XM_039799219.1 mRNA downstream 59979 13948209 ~ 13958971 (-) True LOC120558259
XM_039814215.1 mRNA downstream 83262 13901386 ~ 13935688 (-) True LOC120567288
XM_039799221.1 mRNA downstream 150164 13853636 ~ 13868786 (-) True LOC120558291
XM_039799287.1 mRNA downstream 168163 13842256 ~ 13850787 (-) True LOC120558337
XM_039799607.1 mRNA upstream 23291 14044322 ~ 14051743 (-) False cdc37
XM_039799614.1 mRNA upstream 23293 14044324 ~ 14051752 (-) True cdc37
XM_039799618.1 mRNA upstream 35591 14056622 ~ 14059897 (-) True LOC120558573
XM_039799641.1 mRNA upstream 72254 14093285 ~ 14095869 (-) True LOC120558590
XM_039799654.1 mRNA upstream 106434 14127465 ~ 14132932 (-) True LOC120558598
TU5715 other downstream 451684 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 978716 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 978716 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 978716 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 990557 12991667 ~ 13028393 (-) False LOC120560419
TU6167 other upstream 691172 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 880119 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 1405513 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 2324739 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 3689615 17710646 ~ 17713898 (-) True LOC120560175

Expression Profile