RNA id: TU5963



Basic Information


Item Value
RNA id TU5963
length 1015
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G4359
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14055443 ~ 14056457 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agctcAGGACAGTTAAAACAAGTATTAAAGGGAATAGAAAATCAAAAAGTTAAAATAGAGCATGAcgggaataaaataaaagatacgGTGCAGTGTATGAAATGAAcaataacttaatttaataaaaggcaaaagagaaaagtcttcagccttgatttaaaagaactgaggaGTGTAGCACAATGCACTTGTAAAACTATGTAAAAACTGAGCGCTGCTTCTCCATGTTTATTTCtcactctggggacagaaagcatgACCCAATGACCAAAAatgtctgggtgggtcataatgagGCAGaagatgtaaaaacaaaacaaaacaataaacagtttgCTAAGGGAAATGGGAAACTAGATTCATGTCAACAAGTCAATATTATGTGGTGCTTGTTTGACCAATTTTGGCTGAAACATCCAGTGTGGCTGTTTTactgtttctctctgttgtaTTTCAGTTGTGTTACTGCAAAGAACTTCATAACTTCATTTAGAGATGTGTTGAATATATAAAGCTTAAGAGTAGTATGTGAAATTGCTCACATTGAACTTCACAGTTGTGTGTTAACCCACTGAAAGTGTGTGCCTGACTTCATTTCAACCCACAGACAGAGCAACAGTTTCCTGTTTCCGTGTGAATgtgcatgtatttgttttgtacatttgtgtgtatgtgtgtgcgctgtATTGATGTTAGTGAAAAAGAAGAATGTATACAAGCAACTGTATAATAATGAACTGCTCTTTAATAAGGAAATTTGAGGTTTTATCacgtttattattttgttttttgaatAAATGACACTTTGTTCATGCTCAATGAGATGCATCCAAGTGTCATTGATATTTTATGGCATTTAAAGTACTTGCAAATACATGGAACAAGGTACTGTCAATTAATAGTAATTTAATGGAGACAGTGTCTAAACACCACAATATCaatacatgttaaaaaaaatacgaTGTTATCGgctttttatttcataattgtGTTAAATTAAAGCATTTAAGTCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5951 lncRNA downstream 9724 14045360 ~ 14045719 (-) True G4354
TU5895 lncRNA downstream 34412 14018902 ~ 14021031 (-) False LOC120558548
TU5892 lncRNA downstream 34412 14018950 ~ 14021031 (-) False LOC120558548
XR_005639135.1 lncRNA downstream 287587 13765193 ~ 13767856 (-) True LOC120558530
XR_005639134.1 lncRNA downstream 519195 13520001 ~ 13536248 (-) True LOC120558524
TU5970 lncRNA upstream 11391 14067848 ~ 14071287 (-) True LOC120558581
XR_005639154.1 lncRNA upstream 14390 14070847 ~ 14071547 (-) False LOC120558581
XR_005639155.1 lncRNA upstream 21860 14078317 ~ 14078999 (-) True LOC120558586
XR_005639156.1 lncRNA upstream 49494 14105951 ~ 14108693 (-) True LOC120558606
TU6056 lncRNA upstream 240632 14297089 ~ 14297452 (-) True G4443
XM_039799614.1 mRNA downstream 3691 14044324 ~ 14051752 (-) True cdc37
XM_039799607.1 mRNA downstream 3700 14044322 ~ 14051743 (-) False cdc37
XM_039799596.1 mRNA downstream 12933 14018919 ~ 14042510 (-) True LOC120558548
XM_039814266.1 mRNA downstream 71813 13959135 ~ 13983630 (-) True LOC120567316
XM_039799219.1 mRNA downstream 96472 13948209 ~ 13958971 (-) True LOC120558259
XM_039799618.1 mRNA upstream 165 14056622 ~ 14059897 (-) True LOC120558573
XM_039799641.1 mRNA upstream 36828 14093285 ~ 14095869 (-) True LOC120558590
XM_039799654.1 mRNA upstream 71008 14127465 ~ 14132932 (-) True LOC120558598
XM_039799670.1 mRNA upstream 84858 14141315 ~ 14146842 (-) True LOC120558610
XM_039814376.1 mRNA upstream 93872 14150329 ~ 14179046 (-) True LOC120567413
TU5715 other downstream 488177 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 1015209 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 1015209 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 1015209 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 1027050 12991667 ~ 13028393 (-) False LOC120560419
TU6167 other upstream 655746 14712203 ~ 14719102 (-) True LOC120555938
TU6236 other upstream 844693 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 1370087 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 2289313 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 3654189 17710646 ~ 17713898 (-) True LOC120560175

Expression Profile