RNA id: TU602


Basic Information

Item Value
RNA id TU602
length 483
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC120566920
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1609532 ~ 1675981 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaagttttaaaactccaaacacaGGCTCTATCAGCCCGGGAGTTTGGGGAACAGCCGACTGTTTTCCTGtaacaacaaagcactcgctATATCTCgctcatctcttttctttctctctttctccgggaaataaagctgccttcaagttcAGTCGGAAATGTCGAGATCTATAAAccatctgacagaaaacagtgtgaaatataaagtgtacttgtgctacattgggaaGTCACACAAACAGGCTGTTTCAGTGACACTCCCACTGCTGCACAACTCTGCCAAAAATCTGCAGATCACTTTCTTTGGTCTGAACGCAGCTTAAATTCTATTACATGTCtatagttgtctacagaacacaatATGAGTCATAACACCAGTATGAAAGGTTATTACATGTTtatagtgtctacagaacacaatATGAGTCGTTATTACACCGGGTATAAAAGGTTATTACATGTCtatagtgtctacagaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800 lncRNA downstream 10424 1581983 ~ 1599108 (-) True G593
TU784 lncRNA downstream 33756 1548032 ~ 1575776 (-) True G583
TU782 lncRNA downstream 46558 1488448 ~ 1562974 (-) True G581
TU606 lncRNA upstream 13540 1689521 ~ 1696030 (-) True G435
TU637 lncRNA upstream 93195 1769176 ~ 1792739 (-) True G466
TU612 lncRNA upstream 101462 1777443 ~ 1789759 (-) True G441
TU816 lncRNA upstream 109809 1785790 ~ 1803387 (-) True G608
TU609 lncRNA upstream 133186 1809167 ~ 1849971 (-) True G438
XM_039803728.1 mRNA downstream 33037 1470417 ~ 1576495 (-) True stab2
XM_039813482.1 mRNA downstream 150665 1451999 ~ 1458867 (-) True tomm20b
XM_039813410.1 mRNA downstream 1031540 572765 ~ 577992 (-) True LOC120566769
XM_039813417.1 mRNA downstream 1032961 572764 ~ 576571 (-) False LOC120566769
XM_039812627.1 mRNA downstream 1179559 404857 ~ 429973 (-) True tbce
XM_039812876.1 mRNA upstream 69756 1745737 ~ 1749692 (-) True LOC120566421
XM_039812225.1 mRNA upstream 421388 2097369 ~ 2106501 (-) True LOC120566021
XM_039812236.1 mRNA upstream 452592 2128573 ~ 2135521 (-) True LOC120566031
XM_039812327.1 mRNA upstream 576071 2252052 ~ 2266353 (-) True sde2
XM_039812353.1 mRNA upstream 595479 2271460 ~ 2302539 (-) False LOC120566094
TU785 other downstream 127629 1473756 ~ 1481903 (-) False stab2
TU761 other downstream 249059 1359664 ~ 1360473 (-) True G565
TU704 other downstream 634705 966236 ~ 974827 (-) True G519
TU705 other downstream 636008 966236 ~ 973524 (-) False G519
TU701 other downstream 723189 885349 ~ 886343 (-) True G516
XR_005640399.1 other upstream 57565 1733546 ~ 1749692 (-) False LOC120566421
TU905 other upstream 373088 2049069 ~ 2050384 (-) True G670
TU1327 other upstream 1182515 2858496 ~ 2859302 (-) True G974
TU1366 other upstream 1287759 2963740 ~ 2964320 (-) True G1003
TU1371 other upstream 1299257 2975238 ~ 2978115 (-) True G1008

Expression Profile