RNA id: TU6167


Basic Information

Item Value
RNA id TU6167
length 2869
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC120555938
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14712144 ~ 14719102 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtacttgtgtgtgtgtgtatcttttgtttaatctattattatataactCACtctgccataaaaaaaaaaaacatcattctgGCATCATCATGTATAATGTAGCCAGAACAGAAGTCTTTCCATTGATAGTTAGACCGATATGAAGAATAATCATATTGACCACCGGGGGGCGCCGAATCTCTTTGCTGAGCAGAAGCTGACTTTTACAACAACAATTGGTGCTTATCAATTTGTTCTTCACACGGTTGGTCAGACACCTCTGACAGGCAGAGGGTTTATTAAGTTTCAGATAATGCCATGGCAATATTTTTCCATCATGGTCTAAAATAAAGAAGTTGAACATGACTCCCACAGGACAGACCGGGGCAAGCGAGCGTTTACTGGCTAGATAATCTCACTGTTGTTGTAATCTGTCCATgtggctctctctctgtctctctaatcCTCTTACAGTTGCTGTCACCTTAAATCGCCACTCAGCCTGCAGAGCTGCTGGTCTGCTGGGGTCTCGGGGTGACATCCGAGCGGAGAGGCAGGGGAGCCATGGGGAGTCCCGGGCAGAAAGTGGTGCTGATCACCGGCTGCTCCTCCGGTATCGGGCTGAGGATGGCCGTGATGCTGGCCAAGGATGAACAGAAGCGCTATCACGTCATAGCAACGATGCGTGATCTGAAACGTAAAGATAAGCTGGTGGAAGCTGCTGGCGATGCATACGGGAAAACTCTTTCTCTGGCCGTACTGGACGTCTGCAACGATGAGTCCGTCAAACAGTGTTTTGATGGCATCAAAGATCGACATGTGGATGTCCTCATCAATAACGCAGGTATCGGCCTAGTGGGTCCAATAGAGAGCATCCCAATCGAAGAGATGAAGAAAGTGTTTGAGACCAATTTCTTTGGGGTGATCCGCATGATCAAGGAGGTGATGCCTGACATGaagaagaggaaaggaggaCACATCATCGTGGTCAGCAGTGTGATGGGACTGCAAGGTTAGCAGACGGTATGGTAGGGGAAGGGAGGAGAGGCGGAGTAGGGTGTCAAACGCTACAGGGAGAAATGACAGTTTGTCAGCTTCAGTTTGATGTATGTATGGGTTGATGATGGATGAATGGAAGAGAGGGTGGAAAGCTGAAGGAAGACTAATGGAGTTTAAGTACTGCTGTATGTCAGTACGAAACAGTGAACAAGAAGAACTGATCTATTAAACTGCATGTTGTCTCAAAGTGAAATGTAAGTACTTACTGTGTTTCTATAGGTGTGGTGTTTAATGACGTGTATGCAGCTTCCAAGTTTGCTATGGAGGGCTTCTGTGAGAGTTTGGCTGTGCAGCTCTTGAAGTTTAATGTCACGTGAGTGCCCCTGATGTGATGATTtgagtgtgcatgagcagtgattgacatgcagttagacaccgccccccctccccccccggccctgattggtgcatcggaacagggagctgtggatttttgcaaatcgcactacaggctgtaggtggtgccagaggagccggattgttttttaaattaatgcttcttgtagttctactggaacatagggtcagtttaaGCAAATATGACAGTAAGTTAGTTTTATAGgctaagtcttacctactgcacctttaaccaaCAACTCCAGTTTTTTGAGCAAGTGAAAACAAAATTAGGCTTAGTCTGATTATCATCCTACCACTGGTTCTGACAATGTGATGCAGAATATACAACTAAAACctcaaaaatatggtgttatcCTACTTTCTTTACTTTAGTCGGGCAGTCCAACGCTGTTATAAATCCTGAATACTTTGTGAGAGAGACAAAAAAGtcaatttgttttcatttacgAAGACTGCGCCCAAATGTTGAAGGGATTAATAAATTATTGAAATTGTTATTGATTAATATTCATTTGCGATATTAATCAATAAATGATTCCAGCACTAGTGTTACCCATTTGCCATTGAGTTCTTCCTCAATCTAACAATGCTCTTATGCTTCTTATGATCCCCCTCTGTTGTGGGTCTCTCTCATTAGATTGTCGATGATCGAGCCAGGCCCAGTGCGCACAGATTTTGAGACTAAGATGATTGAGGAAGTGAAGCAGAAGGAGTTTCCTGGAGCTGATCCTGATACGGTGCATTACTTCAAGAATGTCTATCTTCCTTCTTCTATTGACATCTTTGAGACGCTGGGACAAACGCCTGACGACATCGCCAGGTGTACCAAGAAAGTGATTGAAGCAAGCAGGCCGCGCTTCCGTAATCTGACCAACCCCTTGTACACTCCCATCGTAGCGATGAAATACGCTGATGAAACTGGAGGCCTGTCTGTCCATGCCTTCTACCACATGCTCTTTAACCTGGGACCTCTAATGCACGTCAGCATGACTGTCATGAAGTACCTCACCTGTGGATGTCTGAGGAGCAGGACAGTTGCACCAAACTAGAAACTTATATATTATACACACATGTGAAACACCTTGAGGATGTAGACCACAAACTACCTCGGCTTAAAAACAGCTTCAAAGAGATAATCTTCTGTGAGCTGccatatttccctctgtttataCAGTTATCTGTTTTGTAATGAACAATTACTCAAAAAACAACTCATTTCTATATTCTCTTTTCTGTATGAGATTGTAGCTTATGGATGTGTAGATACCACACCTGAGTCCAGTTGAGTTAAAATACAACCGTTTTAGAAATAGTTGTAGCCTACCCAGAGTGCCAAATGTGTAGGGTTTGCCCTTATGAGACAACATACTGATTTCATTGTTTTATCCCAACCGATCCCAAACAACTTCACATTTCAGTCTTATACTCTAATTGGTTCTGAAAGAGGAGTCTACAccttgtttatttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6065 lncRNA downstream 272540 14439456 ~ 14439663 (-) True G4450
TU6056 lncRNA downstream 414751 14297089 ~ 14297452 (-) True G4443
XR_005639156.1 lncRNA downstream 603510 14105951 ~ 14108693 (-) True LOC120558606
XR_005639155.1 lncRNA downstream 633204 14078317 ~ 14078999 (-) True LOC120558586
XR_005639154.1 lncRNA downstream 640656 14070847 ~ 14071547 (-) False LOC120558581
TU6214 lncRNA upstream 131859 14850961 ~ 14852833 (-) True G4566
TU6324 lncRNA upstream 250379 14969481 ~ 14970706 (-) True G4658
TU6326 lncRNA upstream 252278 14971380 ~ 14973191 (-) True G4659
TU6335 lncRNA upstream 280039 14999141 ~ 14999689 (-) True G4663
TU6343 lncRNA upstream 293823 15012925 ~ 15013189 (-) True G4670
XM_039795121.1 mRNA downstream 1235 14702708 ~ 14710968 (-) False palb2
XM_039795113.1 mRNA downstream 1239 14698682 ~ 14710964 (-) True palb2
XM_039814641.1 mRNA downstream 48128 14647019 ~ 14664075 (-) True iqce
XM_039814629.1 mRNA downstream 66351 14616189 ~ 14645852 (-) False LOC120567658
XM_039814621.1 mRNA downstream 66353 14616189 ~ 14645850 (-) True LOC120567658
XM_039814487.1 mRNA upstream 86648 14805750 ~ 14807316 (-) True LOC120567499
XM_039805767.1 mRNA upstream 92240 14811342 ~ 14824896 (-) True LOC120562191
XM_039805776.1 mRNA upstream 92240 14811342 ~ 14824445 (-) False LOC120562191
XM_039797676.1 mRNA upstream 137264 14856366 ~ 14876182 (-) False sh2d3a
XM_039797666.1 mRNA upstream 137264 14856366 ~ 14874074 (-) True sh2d3a
TU5715 other downstream 1144937 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 1671969 13037280 ~ 13040234 (-) False LOC120560438
TU5472 other downstream 1671969 13037280 ~ 13040234 (-) True LOC120560438
TU5473 other downstream 1671969 13037280 ~ 13040234 (-) False LOC120560438
XR_005639486.1 other downstream 1683810 12991667 ~ 13028393 (-) False LOC120560419
TU6236 other upstream 182048 14901150 ~ 14904209 (-) False ubl5
TU6504 other upstream 707442 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 1626668 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 2991544 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 3111590 17830692 ~ 17835761 (-) False epn3b

Expression Profile