RNA id: TU6391



Basic Information


Item Value
RNA id TU6391
length 603
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G4710
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15153544 ~ 15154146 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCCCCCCGGTAGATAGGTAGTATTCCTCTCGGTTAAGGTGTCAAACACCGTTCATTCAACGGTGGAGACGGACTGGGGAAAAGGGGAATAAAAAAGCCGTTGAAGTGCGCGGGGATCAGTTAAGACTCTACAATCCAAAATAACCGTTGGTTTGGAATCTCCAGCGGCAGCCCCGCGCGTTCCGCAGTGGCTCGTGGACAGGTCCGCgcgcctcctcctctcctcctcgcGCCGCTCGCGGATTCTTGAAGACTGAAGGGGGGATTCCGTCACAAATAACAtcaaaacgcacacacacacgcgcacacacgcgcacactttctccctctcttcttcttctcgcTCACCCTCTCCGTCACGCGCGCTTCGAACGAGCACGGCACTCCAAAAACAACCTTAAACAATTCGGAACAAGTTTAAACGGCTCGAGttatttttgtagctttttctgcGCCGCGCGACAGAGGTGATGCTCCGGCAGCCGACCGAGCGCCCGCGCGGAGAGAAATAAGGAAATATTCTCCGGCGGTGTCTTTACCCCGCAGCCCGCCGCCCACGCTTCGCTGGCTGAAGGTACTTACACATCAGCCTAGTTAATTAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6341 lncRNA downstream 99477 15053466 ~ 15054067 (-) True G4668
TU6342 lncRNA downstream 124406 15028486 ~ 15029138 (-) True G4669
TU6343 lncRNA downstream 140355 15012925 ~ 15013189 (-) True G4670
TU6335 lncRNA downstream 153855 14999141 ~ 14999689 (-) True G4663
TU6326 lncRNA downstream 180353 14971380 ~ 14973191 (-) True G4659
TU6397 lncRNA upstream 45599 15199745 ~ 15263432 (-) True G4713
TU6407 lncRNA upstream 124112 15278258 ~ 15321383 (-) False G4722
TU6408 lncRNA upstream 165159 15319305 ~ 15321383 (-) True G4722
TU6420 lncRNA upstream 174042 15328188 ~ 15329291 (-) True G4729
TU6511 lncRNA upstream 576509 15730655 ~ 15730956 (-) True G4797
XM_039795813.1 mRNA downstream 21667 15072782 ~ 15131877 (-) True myo15ab
XM_039795824.1 mRNA downstream 21667 15089421 ~ 15131877 (-) False myo15ab
XM_039795798.1 mRNA downstream 82806 15065648 ~ 15070738 (-) True alkbh5
XM_039795780.1 mRNA downstream 89604 15055349 ~ 15063940 (-) False mief2
XM_039795789.1 mRNA downstream 92092 15054451 ~ 15061452 (-) True mief2
XM_039810761.1 mRNA upstream 139725 15293871 ~ 15298838 (-) True zgc:77849
XM_039804872.1 mRNA upstream 156552 15310698 ~ 15311959 (-) True LOC120561684
XM_039797266.1 mRNA upstream 158286 15312432 ~ 15313905 (-) True LOC120557175
XM_039809839.1 mRNA upstream 223054 15377200 ~ 15393673 (-) True foxk1
XM_039809847.1 mRNA upstream 223054 15377200 ~ 15393672 (-) False foxk1
TU6236 other downstream 249335 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 434442 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 1586278 13531753 ~ 13567266 (-) True G4168
TU5472 other downstream 2113310 13037280 ~ 13040234 (-) True LOC120560438
TU6504 other upstream 272398 15426544 ~ 15429556 (-) False sdk1a
TU6856 other upstream 1191624 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 2556500 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2676546 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 2689790 17843936 ~ 17845404 (-) False LOC120556682

Expression Profile