RNA id: TU6504


Basic Information

Item Value
RNA id TU6504
length 1689
RNA type TUCP
GC content 0.48
exon number 3
gene id sdk1a
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15426544 ~ 15685639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCTCCTCCGGGCCCAGTCCAGGTGGTCTTCACTACTCTGACGAGGACATATGTAACAACTATAACGGAGCGGTGCTCACTGAGAGCACCACACTCACGGAGAAACCCACCGAGGTCTCTGAGTCAGAGtTAACAGACAGCGACTACGAGGACGAGCAGCCCAAGCACTCCTTCGTCAACCACTACATGAGCGACCCCACCTACTATAACTCCTGGAAGCGGCAGCCCAAAAGCCTTAAACCGATCAGCACTCCTTTTGGCTACGAAGAGTGTGCCACTGCAGAAACGGAGCCCTACTACCAGACCGTGGTAACCCAGCACAGCACGGGCGGCGCGTACACACCCACAGGGCAGCCTGCGCACACACACGTCAACCCCAACACCAACCCGCCTCCGGGGTCACGCACCCCTGTGACGGGATTCTCCTCATTCGTTTGACTCTAGAGACAAAATacacacacatttacaccgGCATACACCACCAGATATTCACGCCTATTCCAGAGACTCTCCCGACGAGAGCTAAGAGCGATTCCTACAtgagtttgtttgtgtaaaTGTCGAGGAGAGGAGTCGACTTCAAACTGATGGAACGTGGAGTTTCTGCACAACGCTTCTTCTCCGTTTTCTGTATTTACACGTGCACAAATACACACGCATGCACTCCCTGATGAGCCATTTCAGTATCTCCCACTGGGAGAGAGGAACTTCAAGGTTGAGGAGAATCATTAAAAGACGGCACAGAAGGGAGCAGCTCTTGTTGACAGACTGGTTCATGTACACTAACACGAAGCTGTCAGCTTTAAAATACCACCacacagaggaaaagaaaaaaagaataacaatCAATGATCACAGTTTTTGAACTTGATAATGGACGGAGAGCGGGCGTGGGGCGGGGGAGGTTCTTCAGAAGTTAAGTTAAGGCATTCTCAGTGAGAGTGTTGTGTGGTTTCTGCGAGCGATATGTGATGTTTGGGGTTTGGGTCGGAATATATGAAAACCATGTTTTTTACCGTCTACTGCCTGTTGTCAGCGCTCCTTATACCACAGCCTCGCAAGCCATAATGCTTGCACTGAGCCCACCCCCACACATTTCATCTCTCTTCTGTTGGAAGTTTAATTTTTTACAAGTTTGAATGCGTGTTTGAGTGGGACACGTGTGCGTACAAGCATGCGTGTTTAAATGGCTCTATGCACAGCTTAGAAGCCTGTTCATCCGTCTGTTGTTCACTGCTAAGCAAAGCGTGCcattgtatgtatgtttgtgtttttaagatGGATTTTGTACAGGGAAACCCTTTTTACGTGTGTGCTGTTGTATGTAGTTCGACCATGTTTGTGTAATTCAGAGCAGATAGTGAAACGGCGATGCAGCGGGTCCTCGGCCACACTGACCGATGAGAGGAAACAGAAGGGAGCTCGTTTAACAAGAATCATGAAAAAATAAGCTGCCGTGAATGAGCGTGGAACAAGATTACAGGATATTTTAGGAAATCATTGTTGTTCAAACTGAGTGTGATTGAACTTTGAATCCTAAGGCCCCACTATCTGTACCCTGACCTCAACTCCAGCAGCCAAGCTGACACACATGTACTTTACAGTGCAACAAAAAAATCATCTGTAAGTTTTTGTTCATGAATAATTTTAAGATTTCTCCTCCTTCCCAGTCAGCCAGCAGCCTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6420 lncRNA downstream 97253 15328188 ~ 15329291 (-) True G4729
TU6407 lncRNA downstream 105161 15278258 ~ 15321383 (-) False G4722
TU6408 lncRNA downstream 105161 15319305 ~ 15321383 (-) True G4722
TU6397 lncRNA downstream 163112 15199745 ~ 15263432 (-) True G4713
TU6391 lncRNA downstream 272398 15153544 ~ 15154146 (-) True G4710
TU6511 lncRNA upstream 301099 15730655 ~ 15730956 (-) True G4797
TU6512 lncRNA upstream 305799 15735355 ~ 15735682 (-) True G4798
TU6513 lncRNA upstream 306233 15735789 ~ 15736178 (-) True G4799
TU6529 lncRNA upstream 351841 15781397 ~ 15781753 (-) True G4815
TU6580 lncRNA upstream 564048 15993604 ~ 15994085 (-) True G4860
XM_039810016.1 mRNA downstream 2158 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA downstream 2194 15419252 ~ 15424350 (-) True LOC120564766
XM_039811990.1 mRNA downstream 11581 15410498 ~ 15414963 (-) True gpank1
XM_039809861.1 mRNA downstream 25099 15395835 ~ 15401445 (-) True LOC120564677
XM_039809839.1 mRNA downstream 32871 15377200 ~ 15393673 (-) True foxk1
XM_039804658.1 mRNA upstream 386782 15816338 ~ 15899401 (-) True LOC120561525
XM_039795602.1 mRNA upstream 564816 15994372 ~ 16034615 (-) True nomo
XM_039804834.1 mRNA upstream 621208 16050764 ~ 16058353 (-) True LOC120561637
XM_039805913.1 mRNA upstream 634993 16064549 ~ 16078343 (-) True sec23b
XM_039813974.1 mRNA upstream 816848 16246404 ~ 16283686 (-) True LOC120567135
TU6236 other downstream 522335 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 707442 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 1859278 13531753 ~ 13567266 (-) True G4168
TU5471 other downstream 2386310 13037280 ~ 13040234 (-) False LOC120560438
TU6856 other upstream 916214 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 2281090 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2401136 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 2414380 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 2450312 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile