RNA id: TU6511



Basic Information


Item Value
RNA id TU6511
length 302
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G4797
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15730655 ~ 15730956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tgaggttttttaacattaatatgagttcccccatcctgcctatggtcccccagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccacccatgagagagagacatcatggctttcaaacgagcaaagtggcagttggtcaagaccacacccccaccctccaccttgccccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6420 lncRNA downstream 401364 15328188 ~ 15329291 (-) True G4729
TU6407 lncRNA downstream 409272 15278258 ~ 15321383 (-) False G4722
TU6408 lncRNA downstream 409272 15319305 ~ 15321383 (-) True G4722
TU6397 lncRNA downstream 467223 15199745 ~ 15263432 (-) True G4713
TU6391 lncRNA downstream 576509 15153544 ~ 15154146 (-) True G4710
TU6512 lncRNA upstream 4399 15735355 ~ 15735682 (-) True G4798
TU6513 lncRNA upstream 4833 15735789 ~ 15736178 (-) True G4799
TU6529 lncRNA upstream 50441 15781397 ~ 15781753 (-) True G4815
TU6580 lncRNA upstream 262648 15993604 ~ 15994085 (-) True G4860
TU6610 lncRNA upstream 316888 16047844 ~ 16048880 (-) True G4881
XM_039803969.1 mRNA downstream 45016 15428356 ~ 15685639 (-) False sdk1a
XM_039803962.1 mRNA downstream 45016 15428356 ~ 15685639 (-) True sdk1a
XM_039810016.1 mRNA downstream 306269 15419252 ~ 15424386 (-) False LOC120564766
XM_039810008.1 mRNA downstream 306305 15419252 ~ 15424350 (-) True LOC120564766
XM_039811990.1 mRNA downstream 315692 15410498 ~ 15414963 (-) True gpank1
XM_039804658.1 mRNA upstream 85382 15816338 ~ 15899401 (-) True LOC120561525
XM_039795602.1 mRNA upstream 263416 15994372 ~ 16034615 (-) True nomo
XM_039804834.1 mRNA upstream 319808 16050764 ~ 16058353 (-) True LOC120561637
XM_039805913.1 mRNA upstream 333593 16064549 ~ 16078343 (-) True sec23b
XM_039813974.1 mRNA upstream 515448 16246404 ~ 16283686 (-) True LOC120567135
TU6504 other downstream 301099 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 826446 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 1011553 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 2163389 13531753 ~ 13567266 (-) True G4168
TU5472 other downstream 2690421 13037280 ~ 13040234 (-) True LOC120560438
TU6856 other upstream 614814 16345770 ~ 16347922 (-) True LOC120558720
TU7590 other upstream 1979690 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 2099736 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 2112980 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 2148912 17879868 ~ 17881759 (-) True LOC120556582

Expression Profile