RNA id: TU7105


Basic Information

Item Value
RNA id TU7105
length 2459
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G5265
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17063068 ~ 17065526 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaggagcctgattttttttttttattaactgctttatgtagttctactggaacatagggtcagtttcagcaaaaaaaattagttttataagtcttacctacagCATCTTTAACACAAGCATTTTACCTTGTTTCATTAACGAGAAGGTTTGTCGAAAAACACTTTTATATTCtttaaagccccagtgtgtaacgtttgtagttgttcattatcaaaatctgtattgcccttcacaaacttggcctttttcatgaatattgaccaccacTTTCACATATTCCTATtagcttggaattttacatttgcatttgcatgaactggggtagaccatgggggggtagacgctccataatgatgcttcatcttgaaatacgttagccggtaagggacatacggGCTATACTGCTCCGGCTTTCGCGTTTTCGACTCATAGCTGCTGGTAATGGCTATcgtcgcttcccggccccggcaagtttggagaaggaaacatggaggaccacacgtattcaaaatccaaatttcaggaacaggagtcttcttcttcgcccagcaaaagaaaacagatattgaaaagagcaagagaccggaaaaagagtgaacattggagctgctttggaggcacacaccaaatcccaactagataattatcctccggaccgctgcagtctccttttctttcgCTCTCCTTTCCGTCGggtggcgcacgtgcccgctcATGGTGTCCGCGCCACTCTCCGACATGAACTTATGGatgtgttaaaggggtgatagaatgattatatagggtatttcacactgttccttatggtctcctaatggggtatgtaacattggttgggctgaaaatggcctggttgatattttattggcccttatgcatccctgtgttttggccctatttgtaacaagagcttttcttccaaatatggtatggtcatgaatatttagatgagctgcgcgctgattggttgaactctgaactccgacacacagtcattagacatcaattttcgtaaagcTGCCCATATtggacctctacatagttgatttctcgcataaaaaagtctcagaagtgaatttaatggtaaaatagcagatgaacaatgtataaattttctgagatctgcacgacctagattcggaagactaactgatctcaggtcagttgtgtagcctatgtaaatgttggggcgtgaccgttctcttaatacacccacggctgtgacaaaggttccggtttttgggatgcttacgcaagcaactagctttgttgagattcgcccattttcagcggcagtttcaaaatatgagattttcatagtaaaggggtgtcaatgggattttgagcttctatgtatgtcctatttacccaccaaactgtcgttattcaactatgacagggttggtaaaatcggttttgcattctatcacccctttaagagaacgcatgaactccaacaatcacggctgatagacggccttttgtacaccttcgctttttgaagcgtgaaggctaccgtagttgcaatACTGCGTGGTGagagcaagggggtaagcttcgcttcagaacgcgtagctcctatggcgccattttgatgctacaaagccatcacctctaggggtggtacggttcacaaaacccacggttcggtttgtatcacggttttagggtcacggttttcggttcagtacggttcttattttttctttaacactccagaatatacttcagcatatagctaaaattagcatattgaatgcatgttgcacaaaacgtgcacacagtggcagttctatattattttatttcatcataggtaacgtgaaatccaaaatgttcccacacaccagactataaacgacgctggcgcatcctccagctctgggcagcctctctcccacctgacatttctgcaggtgacgtgacctgcagcggcaccccgctccacttgaggagcggtcggctcggtgtctctcaaaatctgacgaaaatcttttaaactgacctttgtcgatctgaaatgaagacagattcagcaactgcatggcctatttctcgcttaaaatgttttcagaaacacgtttcggtgaactattttagtacaatatgagatcgtattctgaacgagccgccatgacagtctggctttgaaatttgggaccagccagacctatggcagctgattggacgatcgcgtcacatcgtccaatcagctgccatgggttgcctttgtcacgcccatcccgctcgtcatttccagtaactgttttaacataggtgtataaagtgggcactacggcagtaagaggttagtgcacattaacagtgtactgacaaaccgtgcggtacacacatgctccgaaccgagactagcgaaccgagcggttcgggtgttttttcatgaaccgtaccacccctaatcacctcccgttagcattccactgactgccgttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7104 lncRNA downstream 949 17061910 ~ 17062119 (-) True G5264
TU7101 lncRNA downstream 2525 17060161 ~ 17060543 (-) True G5261
TU7080 lncRNA downstream 11211 17051628 ~ 17051857 (-) True G5242
TU7035 lncRNA downstream 90825 16967909 ~ 16972243 (-) True G5202
XR_005640647.1 lncRNA downstream 142342 16917074 ~ 16920726 (-) True LOC120568012
TU7107 lncRNA upstream 4651 17070177 ~ 17071728 (-) True G5267
TU7109 lncRNA upstream 6271 17071797 ~ 17074020 (-) True G5269
TU7108 lncRNA upstream 10790 17076316 ~ 17079018 (-) True G5268
TU7110 lncRNA upstream 13635 17079161 ~ 17081397 (-) True G5270
TU7243 lncRNA upstream 49449 17114975 ~ 17122218 (-) True G5361
XM_039803688.1 mRNA downstream 67427 16985394 ~ 16995641 (-) False notum1b
XM_039803681.1 mRNA downstream 67448 16985394 ~ 16995620 (-) True notum1b
XM_039805535.1 mRNA downstream 96843 16957612 ~ 16966225 (-) True tmc8
XM_039795714.1 mRNA downstream 105736 16946866 ~ 16957332 (-) True LOC120556225
XM_039815158.1 mRNA downstream 117206 16936801 ~ 16945862 (-) True syngr2b
XM_039795539.1 mRNA upstream 87396 17152922 ~ 17154504 (-) True npb
XM_039795568.1 mRNA upstream 90205 17155731 ~ 17161156 (-) True sgsh
XM_039801873.1 mRNA upstream 181023 17246549 ~ 17256447 (-) False LOC120559819
XM_039801851.1 mRNA upstream 181023 17246549 ~ 17256447 (-) False LOC120559819
XM_039801889.1 mRNA upstream 181023 17246549 ~ 17256284 (-) False LOC120559819
TU6856 other downstream 715146 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1633512 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2158859 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2343966 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3495802 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 645120 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 765166 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 778410 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 814342 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1819442 18884968 ~ 18890220 (-) True G5930

Expression Profile