RNA id: TU7109


Basic Information

Item Value
RNA id TU7109
length 2224
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G5269
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17071797 ~ 17074020 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCACACAGGAGTTCTACTATAATGGAGCTTCATTCAAAGCATTAGACTTCAGCACTTCAGGTACTCCTTAATCGGTTAGGGTCAGTTAATTAAATTGGGCTTTTATTTAACTGTGTATATGCAGAGCTTCTTCCATCCTCATGTACCACTGCAGTTTTGCAGTTTGTTGGGATGCAGCCTCCCACAGCTGGAGGTGCATCATCGCACAATAGATGGATCAAAGACATGAAGACTGAGGGTGgctgttgggggtgggggtggagaaAAGAGGGGGGGGAAGGGAAAAAACGGGGGGGGTAAAAAGGAGGCTGCTTTTCTGCCAGGCACTGGTTTATTTCCCCTGTGCCCAAACCCCAACCCCCCATAACCCCATCTACATACTGTACAAACAAAAAGCATGCCAGcaagcacatacatacatacacatccCCCTGCTGCCATGCCAGTGGGgcacaataaaaacacacatggaaaacacacaaaagtgCAATTGTAGTTATGTTTAAAGTGCTAAACTACTCGGTACGTGTGGACATTGAGCTTACTGTGCTTGCAAGGTTCAGAGGTTTTATTCCATACTTAACACATACATCAAATGTCTTAGATAAGAGCAACTAGCAAATGGAATTACTGCAGGTGCACAAAAGGTACCTGTAGTATCTATATCTATACCGGTGCAGCTCCTTCGTAATTATTTTTACTATCTGCAATTGCCTTAGTTTCAGATAGTATGGCTTACTTTTGATGGTATGGCCATTGCAGTTATAACCATTAATCActgtttgtaaatgttttcagtaaAGATGAGACACACTCTAGTTACaaaatgtgccagatttagctatgaacaaaaataaaagtaactgTTGGATCTGATGATAAGATAATCCAACTATGTTACActgataaattaaaaaaaggataGCATTTGTGCAATGACTACAGCTAatgattattgtttttattgattaatctgccacTTATTAGGACATCCTTGTGGCTGAATGGTTATATCACATAACCACAACGGACGATTGTTGCATGTCATATTTCTCTCTCTATTCCCTCGTTTCCTGTCTGTCGCTATACAATCACCTGTCCAAAGGcaaaaaattactttttcaaTTAACCGATCAGTTGTTTAaaattaatgacaaaaaaataatctcagCCTCTCAGTCTTAAATTGCATCctcaaattgtttttgttttaagatattattatatttaaggTATTAAGTTTAATATCATAAAAGACTGAAAAATAGCATCTGTTCATATTTGAGGAGCTTTAGCTTGTTGATTTTTGGTgcttttgctttaaaaaaaatattgttataGCTAGAGTAGTGGGTGTAGTGGTTGTTAGCACTGTGAAGTAGGACAGAATACTAAGTTTGGGGCTATTTCATCAAGGTTAGACAACAACAAACCGGACCTACACCACAGCATAAAATGGCaataaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctctctcaggccaTGTGTAAGTCACCCAGGTTAAGGATCATCTGCTGAGCAAAGGCATCGGCATTCATCTTAGGCGtatacacccacacatacacacacatgcacaaacacacacacacaaagtgccaGAGGTGTCCTTCCCATAATGCTTGCGGGGTGGTCGCTGCGGTGTGGTCAATGCCACAGCCACTGTTGCTACAACAGACAGCTTTTTTGCTGTGGCAGGCTGTATTTTTATGGAGCAAACGAAAGAACGCTGACAACTCAAGAGCAGAGCTGCTTACGGTTACAGTGGAGAGACAACACATAATAcacatactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaggatggGACAAGTGGTGGAGATGAGTAAAATACGGCTAGAAGACAAGAAAAGATAAGAAAGTGGGGAGAAAAGAGAGTGAGGAGTTTGTGGGATAGCAAGGTGAAGACAGGCTAGGTAAGAAAGGAGGAgaaggggagaggggaggggggtggtgGTGAAGGAGGACTGAAAGAATGCTGACGTCTCCAGAGCTGATTAGCGTTACAGCGGAGACATCACACCCACAGCCGAGAAAAATGCTGAGTATGGAGGGAGgaaggggtggggtgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7107 lncRNA downstream 69 17070177 ~ 17071728 (-) True G5267
TU7105 lncRNA downstream 6271 17063068 ~ 17065526 (-) True G5265
TU7104 lncRNA downstream 9678 17061910 ~ 17062119 (-) True G5264
TU7101 lncRNA downstream 11254 17060161 ~ 17060543 (-) True G5261
TU7080 lncRNA downstream 19940 17051628 ~ 17051857 (-) True G5242
TU7108 lncRNA upstream 2296 17076316 ~ 17079018 (-) True G5268
TU7110 lncRNA upstream 5141 17079161 ~ 17081397 (-) True G5270
TU7243 lncRNA upstream 40955 17114975 ~ 17122218 (-) True G5361
TU7261 lncRNA upstream 104379 17178399 ~ 17185803 (-) True G5375
TU7264 lncRNA upstream 108627 17182647 ~ 17186382 (-) True G5376
XM_039803688.1 mRNA downstream 76156 16985394 ~ 16995641 (-) False notum1b
XM_039803681.1 mRNA downstream 76177 16985394 ~ 16995620 (-) True notum1b
XM_039805535.1 mRNA downstream 105572 16957612 ~ 16966225 (-) True tmc8
XM_039795714.1 mRNA downstream 114465 16946866 ~ 16957332 (-) True LOC120556225
XM_039815158.1 mRNA downstream 125935 16936801 ~ 16945862 (-) True syngr2b
XM_039795539.1 mRNA upstream 78902 17152922 ~ 17154504 (-) True npb
XM_039795568.1 mRNA upstream 81711 17155731 ~ 17161156 (-) True sgsh
XM_039801873.1 mRNA upstream 172529 17246549 ~ 17256447 (-) False LOC120559819
XM_039801851.1 mRNA upstream 172529 17246549 ~ 17256447 (-) False LOC120559819
XM_039801889.1 mRNA upstream 172529 17246549 ~ 17256284 (-) False LOC120559819
TU6856 other downstream 723875 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1642241 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2167588 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2352695 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3504531 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 636626 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 756672 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 769916 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 805848 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1810948 18884968 ~ 18890220 (-) True G5930

Expression Profile