RNA id: TU7110


Basic Information

Item Value
RNA id TU7110
length 2237
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G5270
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17079161 ~ 17081397 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCatatacaaaataaagtaaCCTGTTTATcaacaaacatacagtatatacatcaATAAATTAAAAGATGCATCAGACCGATGATGAAACAATTAATTTCATGATTACCAATACcttgtcatcatcatcacttaCGGATCTACAAATTGCaacaaaaaagtacaataatttAGTTGAAGATAAATACTTACAAAGACTGTCACATTATAAGTATTTTCCGATATAAAGTACTGTCGTACAATAATTTATTACACCCCATACAGAAATATTACAAAACACATAATTTCTTATTTCAAGGGCTTTTCTGAATAGGCTACGCCATATTCACACAAAGTCACTACTTTTCTATAGCTTTAAACCGACCGTTAAATACTTTTAGAAACACAAAAGTATCCTGGCCAAATGCTCACTAGTAGACACATGTGGTTtgatggaaaaataaatgttatcagaAGTAAAATTGGAGAGGGGGACTATTAGAACAAaagcacagaataaaaaaaaaagttaatgtgATGTCATACCTAAACTCTGGTAAGGATTTGATGTTAGAGGCTGTGCAACTGATAAGGGCAGGGGCAGcggagggagagcagcagaaGGGGGTACAAAACAAACATTAGTATTGATGAAAACACCAAACAAACGATCAAAGGAATCCTTGGTTCATTTACTCTCATCGATCGGCATTGGGAGGTGGGTGAAAGGGCTTTTAGAGTCTGGTGGCGTGATTCACTAGACAGGAAAACAACTGCACGGCTACATACCGATTGACCAAGCAGCAAGATAAGGAGTTAATGATTTGCATCTTCCAGAAGAATAGGATGTTTTGAAGAAGGGCTTGGCGGCTCCGCTGAGTTAACTCACtaaagctttgtaaaaaaaaaaaaaagggatgggATAAGTGGAGTGGGAAAGAGTTTTATCAGATGTGTCTCCACCATCCCTTTCTGCCTCTGTAAAATATTTATAGAAGTGGTTTAGGTTGCTTGGGTTTGTAATGAAATGTCTTTTCATAAAAGGAGGGTGTGACCCCTGTACAGGCAGTGGAAAATAAGGTCAGCGTTGTCTTACAAGCTcataaactctctctctctggtctgTCAATCGCTAAAGATGACTTAGTTGTCAGCGGATTATGTCTGCAGAGTGAAAATTAGAAAGAAACTTCTGTAATGTTTAACCTCATTTCAGTTTAGAGAGCTAACACCCTTATCtgacacactgctacacactggagaaataaaacaaactacaaGATATTCATGTCTGGAAgacaaaaataatgatattcttCAGTTCGACTACTACAGGCCTTGCATGACAGCTACAGTATAGGTTTCCTTCTTTCTCAATTTTAAATTGATCAAACCTATATGATGATTTTCATGTTTTCACAGTTAATTGTTAAGTGACACTCTATAACAGCAATGTAAGCCACAACACATAAGCCGGATTTTAAACAGAGACAAACTGGTGCTGGCATTTATAGCCAAGTTTAAATTGCAAAACACTCTGTATATAAGCTCTGTAACCTTGTCACATCACACAATACCTGCAATTATAAAACAGACAACTTGacacaacaacaactacaaaaGTATGACTGCTCCTGTGTGGCAATAATAGCATTCTGATATTACAAAACAggacacttaaaaaaaagtacagagcacatacataaatatactGGCTGTGATACCTATATTCACTTGTAGCTGAATATCACATgataacacttaaaaaaaaaaaaaaaagtatcagacattttaatttgacATTTGTAGTTCTCTGATTTCATGGTTGACTGAATATACAAATCAGTGTAAAGATCATGgagaaataatattttttaaatatcaaacCCATTTCCCTTCCAATGCCTTCGCTCATTGTTCACCCTTCTTTGATTTTCTATGAATGTAAGGTACAGATACAGACATACCTCACTAATCTTAATAACTGCACAGCAGTAGGCTAGTTAACTCCTTTTTCTTCACAGTGGAAAAGGTAAAAAGGCTGCATGTActggttttttttatgtaaattgcTTCTAGTTcagtaaattatttaaaatcaggttttcattaggtaaaaaaaaacaaaaaaacaatttgagGCAATTGTACTTTGTGTAGTAAACCTAACTCTTTGACAGACAAACCATTAAATAgcagaatacattttttttaacttcataaAACACCAAATACATTAACATATTTGTTTCACTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7108 lncRNA downstream 143 17076316 ~ 17079018 (-) True G5268
TU7109 lncRNA downstream 5141 17071797 ~ 17074020 (-) True G5269
TU7107 lncRNA downstream 7433 17070177 ~ 17071728 (-) True G5267
TU7105 lncRNA downstream 13635 17063068 ~ 17065526 (-) True G5265
TU7104 lncRNA downstream 17042 17061910 ~ 17062119 (-) True G5264
TU7243 lncRNA upstream 33578 17114975 ~ 17122218 (-) True G5361
TU7261 lncRNA upstream 97002 17178399 ~ 17185803 (-) True G5375
TU7264 lncRNA upstream 101250 17182647 ~ 17186382 (-) True G5376
TU7300 lncRNA upstream 167588 17248985 ~ 17251464 (-) True G5393
TU7332 lncRNA upstream 230173 17311570 ~ 17311817 (-) True G5418
XM_039803688.1 mRNA downstream 83520 16985394 ~ 16995641 (-) False notum1b
XM_039803681.1 mRNA downstream 83541 16985394 ~ 16995620 (-) True notum1b
XM_039805535.1 mRNA downstream 112936 16957612 ~ 16966225 (-) True tmc8
XM_039795714.1 mRNA downstream 121829 16946866 ~ 16957332 (-) True LOC120556225
XM_039815158.1 mRNA downstream 133299 16936801 ~ 16945862 (-) True syngr2b
XM_039795539.1 mRNA upstream 71525 17152922 ~ 17154504 (-) True npb
XM_039795568.1 mRNA upstream 74334 17155731 ~ 17161156 (-) True sgsh
XM_039801873.1 mRNA upstream 165152 17246549 ~ 17256447 (-) False LOC120559819
XM_039801851.1 mRNA upstream 165152 17246549 ~ 17256447 (-) False LOC120559819
XM_039801889.1 mRNA upstream 165152 17246549 ~ 17256284 (-) False LOC120559819
TU6856 other downstream 731239 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1649605 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2174952 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2360059 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3511895 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 629249 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 749295 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 762539 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 798471 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1803571 18884968 ~ 18890220 (-) True G5930

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008436 True 4048 lncRNA 0.35 2 NC_007122.7 45331401 ~ 45335873 (+)
bowfin (Amia calva) TU53483 False 2415 lncRNA 0.35 1 CM030125.1 24879641 ~ 24882055 (-)