RNA id: TU7261


Basic Information

Item Value
RNA id TU7261
length 537
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G5375
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17178399 ~ 17185803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCACACCACACCAGCATCCTCATTGTGATTACAGTTGTGAGACCCAAACCCTCTGTGGCTGCACTCGCTGAGCTTTGATTCGCTGCCTCTGCATGTGACATCATCCAACCAGATGGGCCCGCTGCCCGGTCCAAAGCGTGCACCTTGTGGTGCTGACAGGGCCCTGCCACAGCCCAGCTGTCTACACACCACCTGAGCATCAACCAGCTCCCAGGCATCGTCACAAACCGTCCCCCACTCTCCACGGTGGAAGATCTCTACTCTGCCAGAGCAGGAGTTGTTTCCTCCATTGGCCAGACGGACCTGCCCCTCAACTGCTGTGCTgttacttgttgttgttgtggtagttTCCACCTGATCGCTGGTGAAGTTCTGAGGTGGTGGATGAGGTGTGGTTGGTAAAACTGTGCTGTTGAGTTCTGGTTGAACGCTGAAAAGTCACTGTGAACTCACATGACAACTACAGCCTTTACTGCCATCAGCATTACATTAATTAGGGAAAGCCTAATTTTCTTTATAACCAGTAGGCGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7243 lncRNA downstream 56181 17114975 ~ 17122218 (-) True G5361
TU7110 lncRNA downstream 97002 17079161 ~ 17081397 (-) True G5270
TU7108 lncRNA downstream 99381 17076316 ~ 17079018 (-) True G5268
TU7109 lncRNA downstream 104379 17071797 ~ 17074020 (-) True G5269
TU7107 lncRNA downstream 106671 17070177 ~ 17071728 (-) True G5267
TU7300 lncRNA upstream 63182 17248985 ~ 17251464 (-) True G5393
TU7332 lncRNA upstream 125767 17311570 ~ 17311817 (-) True G5418
TU7313 lncRNA upstream 131473 17317276 ~ 17317820 (-) True G5402
TU7349 lncRNA upstream 145954 17331757 ~ 17333610 (-) True G5430
TU7366 lncRNA upstream 163072 17348875 ~ 17350975 (-) True G5435
XM_039795568.1 mRNA downstream 17243 17155731 ~ 17161156 (-) True sgsh
XM_039795539.1 mRNA downstream 23895 17152922 ~ 17154504 (-) True npb
XM_039803688.1 mRNA downstream 182758 16985394 ~ 16995641 (-) False notum1b
XM_039803681.1 mRNA downstream 182779 16985394 ~ 16995620 (-) True notum1b
XM_039805535.1 mRNA downstream 212174 16957612 ~ 16966225 (-) True tmc8
XM_039801873.1 mRNA upstream 60746 17246549 ~ 17256447 (-) False LOC120559819
XM_039801851.1 mRNA upstream 60746 17246549 ~ 17256447 (-) False LOC120559819
XM_039801889.1 mRNA upstream 60746 17246549 ~ 17256284 (-) False LOC120559819
XM_039801867.1 mRNA upstream 60746 17246549 ~ 17256284 (-) False LOC120559819
XM_039801881.1 mRNA upstream 60746 17246549 ~ 17256284 (-) False LOC120559819
TU6856 other downstream 830477 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1748843 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2274190 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2459297 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3611133 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 524843 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 644889 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 658133 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 694065 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1699165 18884968 ~ 18890220 (-) True G5930

Expression Profile