RNA id: TU7366



Basic Information


Item Value
RNA id TU7366
length 421
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id G5435
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17348875 ~ 17350975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTCATTGTGGAGGGCCTGACACTTTGTTGCGACAGGGCAGCCAGCTGAGCTCCAATAGACAATGCAGAATCAATTTCACTCTGTGATGCTACCTTCTTGGCATCGGGTTCAtCTGCTTCTTCCAGGGATCGTTTCTGTGCTGTGAATGGATAGTTCTCAGCTCCTCCGTTGTTGCTCACTGAGGGAACACCGTCTCCACCGATTTTAGCTGCAATCTGTCTGGCTCGTTGTACTGCATCAGCAAAAGCGTCGTTTTTCATCCCAGCGCCGACTCCGTTTGTCGGCAGACCGCCGTAATCAGACATGCTGCTCACAAGGGACAAATAGACACAGGGGGCAGGCTAGATAGCTTTGGCCGGGTTGAGCTGCGCAGAAGCGGGAAGGCTAAACAGCAGCGTACGGGGGACTCCAATGTGCGCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7349 lncRNA downstream 15265 17331757 ~ 17333610 (-) True G5430
TU7313 lncRNA downstream 31055 17317276 ~ 17317820 (-) True G5402
TU7332 lncRNA downstream 37058 17311570 ~ 17311817 (-) True G5418
TU7300 lncRNA downstream 97411 17248985 ~ 17251464 (-) True G5393
TU7264 lncRNA downstream 162493 17182647 ~ 17186382 (-) True G5376
TU7384 lncRNA upstream 48930 17399905 ~ 17448034 (-) True G5449
TU7400 lncRNA upstream 61167 17412142 ~ 17415066 (-) False LOC120569099
TU7468 lncRNA upstream 206866 17557841 ~ 17613208 (-) True G5506
TU7484 lncRNA upstream 266212 17617187 ~ 17645665 (-) True G5522
XR_005639436.1 lncRNA upstream 348285 17699260 ~ 17700389 (-) True LOC120560186
XM_039789756.1 mRNA downstream 10257 17334937 ~ 17338618 (-) False si:ch211-196h16.12
XM_039789933.1 mRNA downstream 10258 17334937 ~ 17338617 (-) False si:ch211-196h16.12
XM_039789851.1 mRNA downstream 10322 17334937 ~ 17338553 (-) True si:ch211-196h16.12
XM_039817320.1 mRNA downstream 57402 17286966 ~ 17291473 (-) True LOC120569451
XM_039801889.1 mRNA downstream 92591 17246549 ~ 17256284 (-) False LOC120559819
XM_039797436.1 mRNA upstream 18529 17369504 ~ 17385031 (-) True rfx1b
XM_039816967.1 mRNA upstream 61078 17412053 ~ 17421098 (-) True LOC120569099
XM_039795297.1 mRNA upstream 72618 17423593 ~ 17428615 (-) True nthl1
XM_039795286.1 mRNA upstream 72618 17423593 ~ 17426474 (-) False nthl1
XM_039795313.1 mRNA upstream 72618 17423593 ~ 17425845 (-) False nthl1
TU6856 other downstream 1000953 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 1919319 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2444666 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2629773 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 3781609 13531753 ~ 13567266 (-) True G4168
TU7590 other upstream 359671 17710646 ~ 17713898 (-) True LOC120560175
TU7616 other upstream 479717 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 492961 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 528893 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1533993 18884968 ~ 18890220 (-) True G5930

Expression Profile