RNA id: TU7590


Basic Information

Item Value
RNA id TU7590
length 1031
RNA type TUCP
GC content 0.55
exon number 4
gene id LOC120560175
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17710639 ~ 17713898 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGTGCAGCAGAGTTAATCCGTGTGTCTGGGTATGAAGGGAGAGAAGTTCAAGTTTCTTGTCCCTATGGAGAGGGTTATGAGTCTTATGAGAAGTACCTGTGCAAGAATGACTGTGGGAGTGATGATGTTCTTATTACGATGACAGAAGCAAAGAAGAACAGATACTCCATCCATGATGACGAACAGAATCGGGTCTTTACTGTGACCATCTCTGATTTGAGGCGTACGGATGCTGGGAAATACTGGTGTGGGGTGACCAGAACTGGAAAGGATCTCTACACTGAAGTCATGCTGGAAGTAGGAAGAGACAGCTGCTGTGATCATTCCACCAAAGTCCAACGTTATGAGGAGAGTTCAGTGTCCTTCAGTTGTCCGTATGAGTCTGAGTACCAGAACAGCCTCAAGTACATCTGCAGAGGAAACCAGCCCTCCACATGTCTGCAGCACGCACTAATCTCCTCTGACAACAAAcaaaagggacagttcacacTTACAGATGACATGGAATCCAGGAAATTCACAGTGACCATTACCAGTTTGACCCAAAACAATTCTGGGTCGTACCTTTGTGGTGTCCATGGAAACACTGGCCTGGATGTTTTCTCTGCTTTTGAGCTAGAAGTCAAAGAGTGGTGCTGTGTGATGTCACACAAACTGAGCGGCTTTGTGGGACGCCCAGTAACTATGCAGTGTCCCTATCCACCACATCACAAGGATAACAGGAAGTTCCTCTGTAAGGGAGATCACCGCAAAAACTGTAAAGACATGATGACGAGTCAAAGCAGGTTCATGCTGCAAGAAGATGTTGCATCCAGGTCTTTCTCAGTGACGATCACAGAGCTGAAAGCAGGGGATGCTGGGACATACTGGTGTGGTTCAGACTCACAGTGGAGTGCTGGTAATTACACCAAGATTCAGCTGTCACTAGACTTTCAGCAGACCAGCACTGTGATGTCTACTATCAATGTGGTTCCTACCTTCACTGTGGTGGAACCTGTCAGATCACAAGCAACACCTATCCCTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639436.1 lncRNA downstream 10257 17699260 ~ 17700389 (-) True LOC120560186
TU7484 lncRNA downstream 64981 17617187 ~ 17645665 (-) True G5522
TU7468 lncRNA downstream 97438 17557841 ~ 17613208 (-) True G5506
TU7384 lncRNA downstream 262612 17399905 ~ 17448034 (-) True G5449
TU7400 lncRNA downstream 295580 17412142 ~ 17415066 (-) False LOC120569099
XR_005639433.1 lncRNA upstream 24174 17738072 ~ 17739847 (-) True LOC120560178
TU7604 lncRNA upstream 67882 17781780 ~ 17782013 (-) True G5616
TU7632 lncRNA upstream 138766 17852664 ~ 17852981 (-) True G5638
XR_005638874.1 lncRNA upstream 166126 17880024 ~ 17881117 (-) False LOC120556582
TU7677 lncRNA upstream 253429 17967327 ~ 17968130 (-) True G5666
XM_039805789.1 mRNA downstream 28862 17677670 ~ 17681784 (-) True LOC120562183
XM_039817168.1 mRNA downstream 34444 17657147 ~ 17676202 (-) True LOC120569316
XM_039784657.1 mRNA downstream 62824 17641306 ~ 17647822 (-) False crtac1a
XM_039784574.1 mRNA downstream 63082 17641306 ~ 17647564 (-) True crtac1a
XM_039813782.1 mRNA downstream 93565 17614153 ~ 17617081 (-) True avpi1
XM_039796182.1 mRNA upstream 43771 17757669 ~ 17763809 (-) True LOC120556506
XM_039802464.1 mRNA upstream 53025 17766923 ~ 17768175 (-) True LOC120560200
XM_039802451.1 mRNA upstream 59386 17773284 ~ 17779277 (-) False LOC120560193
XM_039802441.1 mRNA upstream 59386 17773284 ~ 17779277 (-) True LOC120560193
XM_039807194.1 mRNA upstream 68691 17782589 ~ 17788980 (-) True LOC120563097
TU6856 other downstream 1362724 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 2281090 15426544 ~ 15429556 (-) False sdk1a
TU6236 other downstream 2806437 14901150 ~ 14904209 (-) False ubl5
TU6167 other downstream 2991544 14712203 ~ 14719102 (-) True LOC120555938
TU5715 other downstream 4143380 13531753 ~ 13567266 (-) True G4168
TU7616 other upstream 116794 17830692 ~ 17835761 (-) False epn3b
TU7631 other upstream 130038 17843936 ~ 17845404 (-) False LOC120556682
TU7664 other upstream 165970 17879868 ~ 17881759 (-) True LOC120556582
TU8084 other upstream 1171070 18884968 ~ 18890220 (-) True G5930
TU8138 other upstream 1258095 18971993 ~ 18982304 (-) False mcrip2

Expression Profile