RNA id: TU7664


Basic Information

Item Value
RNA id TU7664
length 1058
RNA type TUCP
GC content 0.51
exon number 2
gene id LOC120556582
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17879868 ~ 17881759 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTACACATCCTGATAGACATGACAGTGATGCCATAGAAGACATGTGATACCTCAGAGCATGGCATGCCCGCTAAAAGCTCACTGCAGCTACTGCACGTACACAGGGAAATCTGATACAGTAATGTGATGAGTGGCCCGGAGATAAATAACTGTAATGTAGCCTGTCTTGTAGgactgctgctggaaacagctgTAGGGCTCCGGGCCTGCTCTCCTAAATTACACAACAGCGgagggttacacacacacacacacacacacacacactgcctgccTGTTCCCTTCAGCTCACCGACCTTGAGCAGATCCAGGGGATGTGTGCAGCATGCTGCTCCGCAAGACGCCAGCCCACCGAAATACCACCGCGACATCCGTTTCTCCGTCATGGTTCCGTTCTCTGACGTTGTCCGATGCAGCTACAGCGGTGACTTCCTTCTTCCCAGTCCGCCTTCGACACGCTGCGCGCCTGCTCTGTCCGCTTCCTGGCCCGCACGGTGTACCGCTGGCAGTAGCTTGTGGTCTACAGGACGCGGATAACCTCGTTAATCTTCAAACATTCCGATAAGAGACTGCACCACGGACCGGGGGACTTTGGGCTCCTGTAGcatcgcgcacacacacgccacattacgtgtgtgtgtatgtgtgtgtgtacacgtgcgtgcgcgcgcgcgctgTCTGCTGTGTTTGGGCCACGCGGAGAAAAGCGTAGAAGAGAGCAGCCAATTGTCTCTGTGAACGGCGGAGCTGCCTACCCGCCCGCCCCGGGTTTCGAGATcAGGGCAGCAGAGACTACATAAAGACACTGTTGGATttatatcttttctttttcctggcTGGCTGTTGGCACCATGCTGTGTCCGTTTCTGTAATAATGTCTCCAATAAAGTTGTCTATTAAATCAAGTGTATGTTTTTGAACAAAAAACAGGTTATACAACACTGTTGTAACACCTCAACCAAAGCAACTACAAAGTAAATAAGGGCTTATCTTATAGGTGTaacattttgtacatttttagatGAGCACCGATTTTAGCAGAAAGATTAACAGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7632 lncRNA downstream 26887 17852664 ~ 17852981 (-) True G5638
TU7604 lncRNA downstream 97855 17781780 ~ 17782013 (-) True G5616
XR_005639433.1 lncRNA downstream 140021 17738072 ~ 17739847 (-) True LOC120560178
TU7595 lncRNA downstream 145117 17703216 ~ 17734751 (-) True G5608
XR_005639432.1 lncRNA downstream 167680 17710639 ~ 17712188 (-) False LOC120560175
TU7677 lncRNA upstream 85568 17967327 ~ 17968130 (-) True G5666
TU7694 lncRNA upstream 119666 18001425 ~ 18003156 (-) True G5679
TU7695 lncRNA upstream 123476 18005235 ~ 18008723 (-) True LOC120563150
XR_005639916.1 lncRNA upstream 124612 18006371 ~ 18008724 (-) False LOC120563150
TU7747 lncRNA upstream 137864 18019623 ~ 18024037 (-) True G5716
XM_039796386.1 mRNA downstream 31831 17835904 ~ 17848037 (-) True LOC120556682
XM_039817081.1 mRNA downstream 44160 17817507 ~ 17835708 (-) False epn3b
XM_039817074.1 mRNA downstream 44160 17817507 ~ 17835708 (-) True epn3b
XM_039796273.1 mRNA downstream 67293 17794352 ~ 17812575 (-) True b3gntl1
XM_039807194.1 mRNA downstream 90888 17782589 ~ 17788980 (-) True LOC120563097
XM_039807378.1 mRNA upstream 657904 18539663 ~ 18548734 (-) True tecrb
XM_039807379.1 mRNA upstream 657905 18539664 ~ 18552834 (-) False tecrb
XM_039795885.1 mRNA upstream 742349 18624108 ~ 18629125 (-) True tmed1b
XM_039820999.1 mRNA upstream 764400 18646159 ~ 18648400 (-) True LOC120571862
XM_039798130.1 mRNA upstream 793649 18675408 ~ 18702209 (-) False LOC120557593
TU7631 other downstream 34464 17843936 ~ 17845404 (-) False LOC120556682
TU7616 other downstream 44107 17830692 ~ 17835761 (-) False epn3b
TU7590 other downstream 165970 17710646 ~ 17713898 (-) True LOC120560175
TU6856 other downstream 1531946 16345770 ~ 16347922 (-) True LOC120558720
TU6504 other downstream 2450312 15426544 ~ 15429556 (-) False sdk1a
TU8084 other upstream 1003209 18884968 ~ 18890220 (-) True G5930
TU8138 other upstream 1090234 18971993 ~ 18982304 (-) False mcrip2
TU8277 other upstream 1627502 19509261 ~ 19545927 (-) False G6084
XR_005640950.1 other upstream 1845362 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 1846337 19728096 ~ 19728310 (-) True LOC120569594

Expression Profile