RNA id: TU7694


Basic Information

Item Value
RNA id TU7694
length 1575
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G5679
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18001425 ~ 18003156 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGTGATATAGTCATGGCTGTCCGGTCCAAACAGATCCAGGCTACGTGTGCCATACAGAAGGCCGCGGTCGTGGGAGCTCCGGGAGCTGAGGGTGTCAAAGATCTCCCCCAGCAGATCCATCTCCTCCGAGTCACACAGTAAGGAATCTTCCCCCTCATCTTTATCCTTCTCTAGCTCAGAGTCCTCGACCACAGGCCCAGACACAGCTCTGATGCACAGAGATAAGAAACAGGAATGGCACAAGCAAGAAAATACATGCTGtgtattcttgtctttttccTGGGCTTTTCTACATTTCTCCATCTCTCAGTTTCTCTCACCCATCCCATGTGTCTCCAGAGTCCTGCATGTCCTCCTCGTTTCCAGTAACCCTAAGTTTGTGAGCAGGCCGACGGGGACGTGACTGACATGAGGAAAAATAGAATAACAAAGCAAAGGGATAGCAACGCAACATTCACCCAACAAGAAATGGAGCAGTAAAAGTAGCAACAATTGCACAAAGAAGCAGTGCAGGACAGTAGCATATGAATATTAGGTCATGAGAAGGATTTATGTGGATGGTATCTGTTCCAAtttcataaaatatttaaaatagacATGGGATTGTTTTGAAACAGATCTCACCCTCCCAAAGTGTTGTGTGATTGGCAGGCGGTTCTGCAAGCAGTCAGATTTAGCACGGCGGTGCGACACAGATCCACCTCTTTGTAGGGTGTGTTGTTCATTGTGgccTTGTGCATCAGCAGGTTTTTCAAACCTGACTTGGTGAGACCTTTGGCCTGGGAGAGATCAAAACATTAGTTGTTTTGGTAATGCAGATTGAATTCACAGCTGAAAACACCTTGGTTTATACCTTATACTCACCCCCATGTTTGCTTTGGACTTCATGTTAAGGATGAGTGCTCCTCCCCCTTTCTGTCAAAAGTACAAGTGCATCTGTGTTGCACTTTGCGACAAGACTGGAACAAACTTCAAACTATTTCACTGAAGATTAAAATAACTTACCTTTAAATGACCAACCAACTGTTGATACGATTTGCTTCTCCctatataaacagacagaaacaaaatagtGGCGAGTAATAGACAtttgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgcagctgTTTCACACTTTAAGATTTCCTCCTCAAAGAGATCATCTGGTTCCTTCTCTTTGTTCAGAATATCCAAGCGACCATCAATgaactaaaaacaaaaacaattttttttttatttattattattattcaatgAAAATATGTAAGAATGCTCACTCATTTgcaacatttttctttaattctCTTTCAACCAGCCCTTCACCAGCGTTATAATTGCAGTATATGTCCAGCAGAGGGCACAGTGTGTACCTGTTTGAAGGACTGTAAATGAATGGCACTCTTTAGGAACTGCCTCATACTGGCAGACTTGTGATCTACAAACAGTTCCTCACTGAACCATATCTCACCCTCCtgcaaagaaagagagagagagaggcaaacaAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7677 lncRNA downstream 33295 17967327 ~ 17968130 (-) True G5666
XR_005638874.1 lncRNA downstream 120308 17880024 ~ 17881117 (-) False LOC120556582
TU7632 lncRNA downstream 148444 17852664 ~ 17852981 (-) True G5638
TU7604 lncRNA downstream 219412 17781780 ~ 17782013 (-) True G5616
XR_005639433.1 lncRNA downstream 261578 17738072 ~ 17739847 (-) True LOC120560178
TU7695 lncRNA upstream 2079 18005235 ~ 18008723 (-) True LOC120563150
XR_005639916.1 lncRNA upstream 3215 18006371 ~ 18008724 (-) False LOC120563150
TU7747 lncRNA upstream 16467 18019623 ~ 18024037 (-) True G5716
XR_005640502.1 lncRNA upstream 91754 18094910 ~ 18104342 (-) False LOC120566281
XR_005640430.1 lncRNA upstream 91754 18094910 ~ 18104342 (-) True LOC120566281
XM_039796386.1 mRNA downstream 153388 17835904 ~ 17848037 (-) True LOC120556682
XM_039817081.1 mRNA downstream 165717 17817507 ~ 17835708 (-) False epn3b
XM_039817074.1 mRNA downstream 165717 17817507 ~ 17835708 (-) True epn3b
XM_039796273.1 mRNA downstream 188850 17794352 ~ 17812575 (-) True b3gntl1
XM_039807194.1 mRNA downstream 212445 17782589 ~ 17788980 (-) True LOC120563097
XM_039807378.1 mRNA upstream 536507 18539663 ~ 18548734 (-) True tecrb
XM_039807379.1 mRNA upstream 536508 18539664 ~ 18552834 (-) False tecrb
XM_039795885.1 mRNA upstream 620952 18624108 ~ 18629125 (-) True tmed1b
XM_039820999.1 mRNA upstream 643003 18646159 ~ 18648400 (-) True LOC120571862
XM_039798130.1 mRNA upstream 672252 18675408 ~ 18702209 (-) False LOC120557593
TU7664 other downstream 119666 17879868 ~ 17881759 (-) True LOC120556582
TU7631 other downstream 156021 17843936 ~ 17845404 (-) False LOC120556682
TU7616 other downstream 165664 17830692 ~ 17835761 (-) False epn3b
TU7590 other downstream 287527 17710646 ~ 17713898 (-) True LOC120560175
TU6856 other downstream 1653503 16345770 ~ 16347922 (-) True LOC120558720
TU8084 other upstream 881812 18884968 ~ 18890220 (-) True G5930
TU8138 other upstream 968837 18971993 ~ 18982304 (-) False mcrip2
TU8277 other upstream 1506105 19509261 ~ 19545927 (-) False G6084
XR_005640950.1 other upstream 1723965 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 1724940 19728096 ~ 19728310 (-) True LOC120569594

Expression Profile