RNA id: TU8084


Basic Information

Item Value
RNA id TU8084
length 5211
RNA type TUCP
GC content 0.52
exon number 2
gene id G5930
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 18884968 ~ 18890220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcaaacagacacacattaaATCAATTTGATAGTGTcgctttttcattgttttctggCAAAATCTGACACATGCACATGtataaaaaaatcatatgtGACATAAAATAACTGCATATGTACAAACAGagtgctttgtgcaaatgtgtACAGATTACGATCATGTGTTGATAAATGATACATGGGTAATGTGCACAAAACATACATAATACAACTCTTTCATGAacataaaacaaatacacaaagatTTAAAATCAAACAACTCTGTCTAAGTTTTGTCCCAGTGTAATTAAAAACACATACGGGTTGAATTTATACTTTGTAATACAAAGATGTGGAGCTGTCACCATTTAAATTAGTGATTAGGCAATGCTATTTTTCTGTGATGATTTTAATAAGTGCTAATAGAACACTCTTTCCCCTATTTTTCCATCACATAAACAGAATCACACTTCTTCAACAAAAAAGGGATGACTGAATGCTTCTTTAAACTTCTCCTCAATGCACTTGGCTGTTCttacatgcatttttttttttttttaactggagCTGTGGACCTCTAAAGACAGGTCTTTTCCTCTGCCAAAACTAAAACAGATCTTGTGGTACACACATCATCTATCAATACACTGTCAGAGAAGAGTAAAATCCAAGTAACCTTAAATGAGCAAAGCTTAGTGATTTAAAGAATCCTGCGTGTTGGCAATACATGCTTAATGTTCAACATAACTGTAGAAAGAATGAtattgaaattattattatttttttaaagatgatagCATGGTGCAGAATCAAACTAAAAATGTAGTGTATctggcaaaaaaagaaaactgctcATTCATTCCCATGCAAACAAGATCGCGCATACTTCTCCCCCCATGTATCACAGACCACAGAGCCAGCAGTGTTCActtgaatattttatttatacgtGTGTACAGATGTGCGCTACTGTAGTTGTGGTGTGCCCGTCAACCTGTGGAGCCCCACATCTCATATCTACTATTGATAGTTTCTGTTACTGTGGTGCATGCTGAGGCTACAGCGAGCGACATGGCCAAAAAAATCAATCACCAAGGATTATCTAACAACGTGAGGCAGAAGGGTAATCTGGAAAATGTAGGGGAAAACTTTCCTTGAAAACTGATACCTGATATTCTCATCTGTTTTTACAACGTTGTGTGGTATGGTTTATTAGGTTTTGGCAAACTTGAGCATGTTGAGAATATGCACTACAAGCGTACGAGAGATGTGCCTGttacaaaatattttaaaagcaTATTCCTAAATCAAAATGCACTGGCTGTGTATGTTTGGAGTGCACAATGGTAGAGGTAAACAAAGATGCGTTTTATGCTACAGATGGAGATGGCTACATAGAAAGAGATGGTTCCTTCTTTTTCATATCATCTCTGTAGCTATGTGTGTGGCCATAGCTTCTCTAGGCAAGATTATTTAGCCCAAATGTTGATCAGTCTCTAAAATATGTGGCGGTTTGTATGTGTTTGCCGCATCATTACACAGATTTCAAACTTCAGGGCTTTCTTAAAGAATGCAGCTTTGTGCGTGTAATTCCACTACAGATAAGGCAGCAACAGCAAAATAAACAGTGGCCATGTAGTTGACTGATATTATTTTGCATCATATTACAGTGATCTTTTCTATTTTAATGACTTGGAGTAGAAATTAAAtatctttctctcacacatacacgcaaAGTACAAAGGGGAAACAAGTGCTTTAAAGAGTAAAGATAAAAGCATGAAGTGAATAAGGAACAAAGAGAACTACAGAGGTGccagctattcaatgagaacaccaccaccacactaGTCCAGGCTACCGGTTGATGACAGTAtgaaagaaatggaaaagagCAAAAACAATTGATGGAATTTGTGAAAAATAATCTCAGCAAAACGTGCACAACGAGCATCATTTCTTCAAACATACAGTCATAATCTATAGTCATTATGAAAACAGCATGATAAAAAAACTTTCTGAAAACCAAAatactcaaaaaatacagtcatactttttaggcaccacAAAACAATCAGCTAGTTTAGGTTGCACTGCACCTGTAGATCACTCAATTAAAGTGGCACAATTTATGTATATTGATACAGTAGAGGGCCTTCTCCGTATAAAGGCTGTGACAGGATAAAGTTAAAAGTCCCACCCCTTCAACAGCAAATCACAAAGCTAAAGGCAGACAATACTTAACTATTGAATAAATCTATAATGATGAACTGaccaatgtttttcttttttccggCGATGAAGGCAACGAATGAAACTACATTTGAGTGCGAGGTTTTAAACTGTTGACTGATGAACTTGATCTGCGCTTTAACACTTTAACCAACAGCAATGTGGACTAACCCCTATCATCTATCAATAACTAAAGACTGATTCTCCCTCACAGTCCCACTTCAAGTGATACTCCACTCAACATCTTTTGAGTATCAAACTCTCACCCCACTGTAGTCTTTAAAGGATAAGTCTGGTGTATTTTTCTTATGGTTAACAAATAGTTATTGTCTGTGTAGTCTGATgtcttattcctctgtgccttAGAgttattaaaaacaataatagcACATTAATGAGCCACATTGTTACATGCGTTCACATGTTGCTTCATTACAATAAACATGGTCTATGTAGTTTCATTTTGAGTCAATCTCACATACACCgccctgctgctgtaaatactcactaACATACCACATCAGCCACTGAATACAGTCCCCAGCAAATGCACTATTTTCTCTTGTTGATACAAATTTGCTAAAAACTATAGTGCCCAGGGTCACCATGCTGGCCCAGGGATTaagggacctttgttgcatgtcattctctctctctctctctctctctctctctcttttcctgtcattACTTTACTGTGCTATAATGAAAAAAGACATACAATGCCCCCAAACATACTAAATACTTTTGgtcttttaatttgttttgtaccaacaaaaataatttaatagaATATCTCTTGGTAAAGGTAGGTGCAACAAGTTTGTCGTTCGCCCTATTTCTCGTTTCTCTCTACGCAGCACAGCGGCTTTCAGTCTAGCCTATGAGTGAGCTCCAATGGAGTGGTTCTGACCAATGAAAAAGCAGAACGGGTCATACTCAAAAGACACCTCTTGAGTGGAGTatcactttaagtatatttaaaGTGCCTTCCTGCGTTTGTGATCATCTCACTGTTTAAAACCACCTTTTCCTCCATATCTATATTccctttttaatttaatgttgtGCTTTTGATTGTACTTGTGACGGACAAGAACTCAGTTTCAACGTTCTTAAAATCTATTTCACGGTAATAACTACCAAATACAAGTGGTCGACAAAACACTGTGCAAGACCTGTGCTTAAAATGTGCATTTAGCTGCTACACAAACTAAAATGTATGCAGCCTGCTTTGTAGCATGTCCCCTTTTACCGAGACTAGCacaaattaatactgttttAAGCCCTCATGTCAAAGCAGAATTACAAATTAACACTGCTTTATGTATTCCCTCATTCTTCCCATAGTTCCCTGCTCAGCCCATTATGCTGCACTGGCACTTATATagaatctaaaataattttCCCTTAAGTAAGGTCTAGACTTTGATCAAGTTAAAAGAAATGATATGGCACaacaataatgtttttttttaagaaatacttccattgaaaataaaaagcatgGAGTAAGAAACCACAGCATGTTCTGTAGTCTAAGATTGTTAAAACTTTGTTCAGTATTCATATTTGTTTGTTCACTGTTCTAGTCCTGAAGGCACTTAATAACAAAAATGAATAAGAAAAAACATCAAgaacaaaaccaacaaaacGTCCTTCCCTCTGAACCCCTTTCAGCCTTCTTCCCTATACACTGCTGTGCTCAACACAGGTCTAACCCACCCCAGCACTCAGGCAACATTATCATGAAAGACAGTAGTAGCCATTTTCATAGCCACTGTAGCCACTGTTTGTGTTGGAGTGAAAAACTCCCTCTTCTTCATCTGCCGAAGCCACTTCACCCACGCCTAAAGGTAGGGACATCCTGCCCTGCACCTGCAATCGGTCCTGGAGAGTCAGCAGCCGGGGGCAGCAGTGGGGCAGAAGACAGGGGAAGAGAATAGGAGGGATCAGAGACGGGCATAAAACTCCTCGTTGAGTATTGTTAGCTCGTTGGCCTCcacctcttcatcctcctcttcttgAAGTGCGAGAGGAGCAGGCTGCACCTGGGAGGGCACTTGTGCTGCACTAGGCTCTTGGCCCAGTTCAGAGTGTGGAGGGAGGTGAAGGTCTATGGCAGGGGACTGCCCAGGGAGGTGTGGAGGGTCCCTATATCCCTCCTCCCTCACCTCTGTGGACTTAGCTTGGACAGGCTCAGGCCCTGCTCTTGAAGGCCTTATAGCGCTCTGTGGTTGTGGAGGGAGTgtgaaaagagaggaggaaggaggagtggAAGAAGAGGGGGGGAGAGCTGCTGCATGGGCAACCGATTCTGAAGTATTATTGGCTGCTGATGCCACGGACGAGGGTCCTACCCTGGCGCCCAGCTCTGTTCGGTCTTGATATATACTTTCCCCACTTTTGGGGTACAGAAAGGTCCTCATTTGACCTTTGCCCTTAACATTCACTGTACCTCTATAGTCAAACTCTAAGCCCATGGCACTGAGCACAGCATGGCTCTCCTCGCTCACCTGCACCCGACACTCCACCCCAGTGGAGTCCATGCGGCTGGCAATGTTGACCGTGTCTCCCCAAATGTCATAGAGCAGCTTAGTGGTGCCGATCACCCCCGCCGTCAGCGGCCCGTGGTTAAATCCAATACGGAGCTTGAAACCAAAACCCAGCATGTTCTTGTTAAAGTCATCCAGGACGCCCATCATCTCCAGGGCAAAGTTGAAAAGTGCCCTGAGGTGAGCGTGCAGAGAGTCATCATCATTCTCAGCCAACTCCTGGACGTTCAGTCCGGACGCTGCCATGTAGGTGGCACCGATTGTTTTGATCTTTTCCACACTTTTGAATTCAGGTTTACGAAGGAGCTCGTCAAAGTCTCCAATTAGCTCATTGAGGACACGGTAGCACTCTTTTCCTCCCTCGTAGCTCTCTTCATAGAACTCACTGAAGTTTACAATACTGGCAAAGATCACGCCCACACTGTCGTGATTCTTGGAGTAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8079 lncRNA downstream 9230 18874875 ~ 18875738 (-) True G5926
TU8074 lncRNA downstream 27429 18836277 ~ 18857539 (-) True G5921
TU8026 lncRNA downstream 195923 18630276 ~ 18689045 (-) True G5894
XR_005636725.1 lncRNA downstream 220461 18663944 ~ 18664507 (-) True LOC120545674
TU7874 lncRNA downstream 297432 18584673 ~ 18587536 (-) True G5809
TU8089 lncRNA upstream 40036 18930256 ~ 18930500 (-) True G5935
TU8110 lncRNA upstream 66187 18956407 ~ 18956631 (-) True G5954
TU8128 lncRNA upstream 70992 18961212 ~ 18961997 (-) True G5970
TU8143 lncRNA upstream 120974 19011194 ~ 19011517 (-) True G5980
TU8146 lncRNA upstream 133012 19023232 ~ 19037066 (-) False cxcl12b
XM_039802476.1 mRNA downstream 80334 18790616 ~ 18804634 (-) True LOC120560204
XM_039806989.1 mRNA downstream 97110 18783925 ~ 18787858 (-) True LOC120562921
XM_039806907.1 mRNA downstream 97168 18783925 ~ 18787800 (-) False LOC120562921
XM_039801562.1 mRNA downstream 118084 18752659 ~ 18766884 (-) False LOC120559658
XM_039801571.1 mRNA downstream 118134 18752659 ~ 18766834 (-) True LOC120559658
XM_039791367.1 mRNA upstream 81750 18971970 ~ 18982318 (-) True mcrip2
XM_039791131.1 mRNA upstream 94883 18985103 ~ 18990486 (-) True gde1
XM_039815221.1 mRNA upstream 132996 19023216 ~ 19037081 (-) True cxcl12b
XM_039815229.1 mRNA upstream 138020 19028240 ~ 19037081 (-) False cxcl12b
XM_039804007.1 mRNA upstream 215027 19105247 ~ 19120656 (-) False xpnpep1
TU7664 other downstream 1003209 17879868 ~ 17881759 (-) True LOC120556582
TU7631 other downstream 1039564 17843936 ~ 17845404 (-) False LOC120556682
TU7616 other downstream 1049207 17830692 ~ 17835761 (-) False epn3b
TU7590 other downstream 1171070 17710646 ~ 17713898 (-) True LOC120560175
TU6856 other downstream 2537046 16345770 ~ 16347922 (-) True LOC120558720
TU8138 other upstream 81773 18971993 ~ 18982304 (-) False mcrip2
TU8277 other upstream 619041 19509261 ~ 19545927 (-) False G6084
XR_005640950.1 other upstream 836901 19727121 ~ 19727332 (-) True LOC120569705
XR_005640905.1 other upstream 837876 19728096 ~ 19728310 (-) True LOC120569594
XR_005640939.1 other upstream 838847 19729067 ~ 19729281 (-) True LOC120569665

Expression Profile