RNA id: TU884


Basic Information

Item Value
RNA id TU884
length 466
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G656
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2011732 ~ 2028703 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccatcaccaaactccaccagactccatgtaaataatcaggacttttatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactaccaaaagccgtcttggttcatctttccactgttccaacaatcaccgctctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacactaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgcaaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU860 lncRNA downstream 55741 1938778 ~ 1955991 (-) True G637
XR_005640795.1 lncRNA downstream 71859 1936008 ~ 1939873 (-) True LOC120568850
TU857 lncRNA downstream 71871 1936008 ~ 1939861 (-) False LOC120568850
TU833 lncRNA downstream 98351 1892723 ~ 1913381 (-) True G618
TU823 lncRNA downstream 99468 1878797 ~ 1912264 (-) True G614
TU1058 lncRNA upstream 79116 2107819 ~ 2108178 (-) True G767
XR_005640326.1 lncRNA upstream 181708 2210411 ~ 2210831 (-) True LOC120566044
TU1091 lncRNA upstream 211160 2239863 ~ 2240595 (-) True G799
TU1103 lncRNA upstream 226113 2254816 ~ 2255577 (-) True G808
TU1102 lncRNA upstream 232324 2261027 ~ 2263160 (-) True G807
XM_039812876.1 mRNA downstream 262040 1745737 ~ 1749692 (-) True LOC120566421
XM_039803758.1 mRNA downstream 382573 1625530 ~ 1629159 (-) True LOC120560873
XM_039803728.1 mRNA downstream 435237 1470417 ~ 1576495 (-) True stab2
XM_039813482.1 mRNA downstream 552865 1451999 ~ 1458867 (-) True tomm20b
XM_039813410.1 mRNA downstream 1433740 572765 ~ 577992 (-) True LOC120566769
XM_039812225.1 mRNA upstream 68666 2097369 ~ 2106501 (-) True LOC120566021
XM_039812236.1 mRNA upstream 99870 2128573 ~ 2135521 (-) True LOC120566031
XM_039812327.1 mRNA upstream 223349 2252052 ~ 2266353 (-) True sde2
XM_039812353.1 mRNA upstream 242757 2271460 ~ 2302539 (-) False LOC120566094
XM_039812361.1 mRNA upstream 242758 2271461 ~ 2302586 (-) True LOC120566094
XR_005640399.1 other downstream 262040 1733546 ~ 1749692 (-) False LOC120566421
TU785 other downstream 529829 1473756 ~ 1481903 (-) False stab2
TU761 other downstream 651259 1359664 ~ 1360473 (-) True G565
TU704 other downstream 1036905 966236 ~ 974827 (-) True G519
TU905 other upstream 20366 2049069 ~ 2050384 (-) True G670
TU1327 other upstream 829793 2858496 ~ 2859302 (-) True G974
TU1366 other upstream 935037 2963740 ~ 2964320 (-) True G1003
TU1371 other upstream 946535 2975238 ~ 2978115 (-) True G1008
TU1552 other upstream 1380118 3408821 ~ 3410272 (-) True LOC120551303

Expression Profile