RNA id: TU8873


Basic Information

Item Value
RNA id TU8873
length 1203
lncRNA type sense_over
GC content 0.33
exon number 2
gene id LOC120566957
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 21563091 ~ 21569059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACAGGTGTGCatgttacatttttgtttataaaTATCAGATTGAGATTAGTTAATGTGTAGGAAATGGTGTAATCATGGTTTTCCTGTTTATGTGCTGTTTATAcatcagaggcctgtactacgaatcaaggTCAACATGTCCTGgctttctttcagttacccggcctcactaaccctaacaaccgcggtcctgtttaacctgtgtcacgacggtggttatcaactagttcaatctacccagggtttcccaaacCAGCgtcgcgttcacataaaagagtgtgtgtttgcacagcacgacaaatcgcaaacatctaccagagccacatattttatataagaagagcaaactataattctacataaatatgaagaacacagacacggttttgcaGGCGAAACGCAATagagtcgctgcttcctaaaacaggaggaaaagctagtaaaaaaatagccgacgctgtagatgcgtacatcacaactcttatcaatattacttccccatcagtcaggcacaagatctgaccataattacacttgtgctttccataaactgtcgttgctttagcctattatttcagttgcaaccctggcagtggaagcgatcgtgagagcaaataaaatatatgaaaacataattcaaaccgctgtccGCAtcggcaacacacggctcaagaagccgacagcCTATGTAATTCCCTTTCATTAAAATgcatatatttcataaaaatacacatcagggaatgttaacggggttgtcggtctctacattttttaacttttatgagcgcaaccctctctctctctctccctctctgtctctccctccgcgcaccgagctccaccttatatagaacggtgacgccgttatcaatcgagtattgattagtcagtaggcggtgcttttacaccagtTGATCTcaaatctccaacttaacctgcttccgaccaggttaggtggtcagcataagttaccacggcgatttaacccggtaacaagcGATCCACCGTCGTGGTAGgctacagaaaaccctgggttgaacctgaagttacctcgttaacgccaaatcttgcttcgtagtacaggcctcaggtccCAGCTGTAGAAGTAGGCCTGAGTATATGTCAGCTTAGATGAAATTACCCTATGCACAACTGTTAAACTGTTTTTGTTGCTCCTGTACCCAAAATAAATTTGTCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8831 lncRNA downstream 100441 21458904 ~ 21462650 (-) True G6501
TU8808 lncRNA downstream 200970 21358598 ~ 21362121 (-) True G6483
TU8793 lncRNA downstream 242409 21320018 ~ 21320682 (-) True G6471
TU8691 lncRNA downstream 427200 21133510 ~ 21135891 (-) True G6410
TU8661 lncRNA downstream 579814 20980185 ~ 20983277 (-) True G6387
TU8912 lncRNA upstream 84537 21650608 ~ 21657734 (-) True G6565
TU8918 lncRNA upstream 98424 21664495 ~ 21667705 (-) True G6571
TU8948 lncRNA upstream 160318 21726389 ~ 21727737 (-) True G6595
TU8956 lncRNA upstream 176785 21742856 ~ 21743110 (-) True G6602
TU8972 lncRNA upstream 185773 21751844 ~ 21753144 (-) True G6616
XM_039813706.1 mRNA downstream 1448 21557960 ~ 21561643 (-) True LOC120566963
XM_039813717.1 mRNA downstream 6926 21554425 ~ 21556165 (-) True LOC120566968
XM_039813731.1 mRNA downstream 18372 21542336 ~ 21544719 (-) True LOC120566976
XM_039796927.1 mRNA downstream 22720 21509457 ~ 21540371 (-) False LOC120556977
XM_039796935.1 mRNA downstream 22720 21524031 ~ 21540371 (-) True LOC120556977
XM_039804288.1 mRNA upstream 79726 21645797 ~ 21648906 (-) True ten1
XM_039799044.1 mRNA upstream 137310 21703381 ~ 21706851 (-) True aanat1
XM_039815051.1 mRNA upstream 189221 21755292 ~ 21792116 (-) True LOC120567942
XM_039797610.1 mRNA upstream 246637 21812708 ~ 21818443 (-) True LOC120557332
XM_039813671.1 mRNA upstream 290599 21856670 ~ 21877258 (-) True cygb2
unassigned_transcript_59 other downstream 178248 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 240112 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 1518395 20042763 ~ 20044696 (-) False spink4
XR_005640880.1 other downstream 1797788 19765088 ~ 19765303 (-) False LOC120569510
XR_005640934.1 other downstream 1798788 19764088 ~ 19764303 (-) True LOC120569647
TU8945 other upstream 142469 21708540 ~ 21709812 (-) True G6592
XR_005640901.1 other upstream 472938 22039009 ~ 22039151 (-) True LOC120569580
TU9329 other upstream 1415854 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 1522429 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 1647785 23213856 ~ 23242290 (-) True G6943

Expression Profile