RNA id: TU8945



Basic Information


Item Value
RNA id TU8945
length 660
RNA type TUCP
GC content 0.60
exon number 2
gene id G6592
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 21708540 ~ 21709812 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTTTCTTCTCCTTATGTGTGTTAGCTGTCGGTCACTAAAGATGACGGGGTACCACTGGACGCGTACAAATCCCCTACAGAGAGGCCGACTCGGGGTCTCCACGCCGCTCTCAGTGTCCGAACCACACGGgactcgtcctcctcctcctcctcctcctccacctcctcctccacctccacctccgcCGCCATCGTCGAGGTCCGAGTCTGAGTTAAAATCCTCTTCGCCGTGGATCATCCGTACGAGGCCAAACCGGACTGAGCCGCGATACCGCCCGGAGACCAGGTCGTGGGAGAAGAGCAGCCGCTGGGAGCCGTCCGCCGTGGGAGACAGAGCCATGGATAGAGGCTCCGAGCCAGGGCTGGCTGCGGGAGAGAGGCCTGGGGTCAGGGATGCTGCCGCTTCTGCTGCGTTCGTTGTGGCCGCTGCATCCGACGCTAGTGGCTCCGCCATCGCTGCTGTTGTCCAGGGAGTGATGCTAGAGCGCGAGGATGATGGTggaatgaaaaaaaatttaacctgGAAGCAGCGATGTGCACGTGTTTACGTCGCTACGAAGAGCTGCGTAGCTGTAGCGCAGTGTGTGCGCGTCATCACGCAGTACCCTCTCGCACCACTGAGAGGCAGTGTGAGTCACGAAATAATTGATGGTGCCGGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8918 lncRNA downstream 40835 21664495 ~ 21667705 (-) True G6571
TU8912 lncRNA downstream 50806 21650608 ~ 21657734 (-) True G6565
TU8873 lncRNA downstream 142469 21563091 ~ 21566071 (-) False LOC120566957
TU8831 lncRNA downstream 245890 21458904 ~ 21462650 (-) True G6501
TU8808 lncRNA downstream 346419 21358598 ~ 21362121 (-) True G6483
TU8948 lncRNA upstream 16577 21726389 ~ 21727737 (-) True G6595
TU8956 lncRNA upstream 33044 21742856 ~ 21743110 (-) True G6602
TU8972 lncRNA upstream 42032 21751844 ~ 21753144 (-) True G6616
TU8971 lncRNA upstream 43909 21753721 ~ 21754158 (-) True G6615
TU8973 lncRNA upstream 52285 21762097 ~ 21762306 (-) True G6617
XM_039799044.1 mRNA downstream 1689 21703381 ~ 21706851 (-) True aanat1
XM_039804288.1 mRNA downstream 59634 21645797 ~ 21648906 (-) True ten1
XM_039813694.1 mRNA downstream 139481 21565908 ~ 21569059 (-) True LOC120566957
XM_039813706.1 mRNA downstream 146897 21557960 ~ 21561643 (-) True LOC120566963
XM_039813717.1 mRNA downstream 152375 21554425 ~ 21556165 (-) True LOC120566968
XM_039815051.1 mRNA upstream 45480 21755292 ~ 21792116 (-) True LOC120567942
XM_039797610.1 mRNA upstream 102896 21812708 ~ 21818443 (-) True LOC120557332
XM_039813671.1 mRNA upstream 146858 21856670 ~ 21877258 (-) True cygb2
XM_039799111.1 mRNA upstream 290456 22000268 ~ 22020435 (-) True LOC120558174
XM_039817193.1 mRNA upstream 312432 22022244 ~ 22033208 (-) True ttc26
unassigned_transcript_59 other downstream 323697 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 385561 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 1663844 20042763 ~ 20044696 (-) False spink4
XR_005640880.1 other downstream 1943237 19765088 ~ 19765303 (-) False LOC120569510
XR_005640934.1 other downstream 1944237 19764088 ~ 19764303 (-) True LOC120569647
XR_005640901.1 other upstream 329197 22039009 ~ 22039151 (-) True LOC120569580
TU9329 other upstream 1272113 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 1378688 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 1504044 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 1862893 23572705 ~ 23573049 (-) True G7065

Expression Profile