RNA id: XM_039796157.1


Basic Information

Item Value
RNA id XM_039796157.1
length 2518
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120556502
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22328519 ~ 22335583 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CggtccaaaaaaataaaagactgaGACTAAGTGTGAAACTAATTACGACTAGCAACCATTCAGTGGATTTTAGCTTGAGGAtatattttatctttatttgtatttttcttaaaCTTGTCATAGGCTAATCATGGCATTTCTGATCTACTTGACTCTACTGACAACAGCCGTCATCACACAGGTGACTGCTAGCTGCCCAGCAGTGTGTGAGTGCCCTGACGAGCCCCTGGTTTGCCCTCCAGGAGTTAGCACTGTGCCAGATGGATGTGGGTGCTGCAAGGTGTGTGCTGCACAGCTTAACCAGGACTGCAGCCCCACGAGGCCCTGCGACCACCACAAAGGGCTGGAGTGTAATTACGGCAACGATGTGACCATGGCCTGGGGCATCTGTCGAGCAAAATCAGAGGGACGCACATGCGAGTACAACGGCAGGATCTACCAGAATGGCGAGAGCTTCCGTGCCGGCTGTAAACACCAGTGTACCTGCATCGATGGCGCCGTTGGCTGCGCTCCTCTCTGCACCAACAAGCTGCCACCGGCCTCTCCATCCTGCCCCTACCCACGGCTGGTCAGGATACCCGGGCAGTGCTGCTTCAGTGTGGTCTGCCATAAGGGTACCTGGTGGCTGCCACCTAAGCATCagGTGCCTCCACCACAACAACACCTGACCAGACGTCAGCACCAGCCTGAAAATGAGCTGGCCAACGAGCTCGCCGACGCCAAGTCCAGCGGCTGGGAGAGTGAACATGGATACAAACACCTGCCTGTGTGGAACCATCTGAAGGAGAAGAAGTGTCCAGTCCAGACCACTGACTGGTCCCAGTGCTCCCGCAGCTGTGGGATGGGAGTTTCTTCTCGCATCACCAACAAGAACCCTCAGTGCAagctagagagagagacgaggatcTGTACCGTACGGCCATGCCACGGCCTAACAGTCCCAGCCAAGaGAGGGAAAAAGTGCTCCCCAACCCAGAAAGCCCCCGAGCCTATCCGCCTGTCCTACGGAGAATGTGTCAGTGTCCGCCTCTACCGGCCCAACTACTGCGGTGTGTGTGCGGACGGACAGTGCTGCTCGCCACGCCGCACGCGCACTGTACCCGTGAGGTTTGTCTGCCCAGACGGCGAGCGTTTCCAGAGGTCGGCCATGTTCATCCAGTCGTGTAAATGCAGCGATGACTGCGGCCACCTCAACGAAGTGGCCCTCCCTCCACAGCAGTGGATGTACGGAGATACACATCAGTTCATAGACTAGTACTGAggagcatttttattttgttttattatgatGAGGTCGACTTTTTGTTGACGCTTCAAGACTAGGGGccgttttttttctcatctggCTCCAAATGAGGGAAGACCACAGGCACCCACCTGACTGTCCAACCGCAGGGAGGAAGGGCCACCTCTGTTTGATTCATCATAAAGGCAACCCTATTTGTGATATAATTGTGACAGGAGTGGATTGTACACTTGCACGCTCCTAATCAAACAGACGTGGGACTGAAATTAGAGCCCTGAAGCAAACCTGGACTTTTTCACTCTGGACTGACTGCTGGTTCGAGTGTGgaggattttttgtttttttggagaCCCCAGGGCCAGCCTAAGAGGGGAAACCCTACGAGAGCAACACAGCACTTTGTTTAGCACAGAGACTTGGGGAACTATGACAGCAGTGCTTAAGGATCACCTCACCTGCAACAATAGCCTCAAATACTGTGATTTTTGGATGACGCCttatcccacaatgcactgtAGTTACTCAATGACAAGCAAAATAATATTTTGCAGCTTTATCTAGAAAGATGTGGACTTTattaaaaattatataaaatcaGCACAGCATGTTATGTACATCAGCGGAAACTTTGGCATGCTGACATGAATTTTATTCCATTATGACACAGTTATGATAAGGAATGCTATCTGGAACTGACACAAGCATTAAGCTAGGACTGGACCAATTTCTTGTTTGTGCATTAAATGCAGCTTAGAGAAATGTCTTACGCAAACCTGTATTTGAGAATTTTTGGATCACACTGTATTCTgtaaatattttctttatttggatCCATGTTTGTATTGTCACATTAACATATTTCCATggattaagacattacagtgtAGCAGTCATGCATTTTTGTTGGTCCATCTATGAGATAAAACTGGCTGCTGAGCTCAAGGTTCATGCCAGGTTTTATCTCAACATGTAGTTTTAAACTTGGCAGCCAGTTCAAAGTAGCCAAATGTTTGGGAAAACAGCTGTGTAACTATGATACAGCACCCTCTGCTTGTGAGGATAATTAACTGCAATAGtttgtattttatatgatactgtactgtaactgTTTATTCTAACATCTGAAAaacttaaatgtttaaaaacatttaaaatcacaacaaatttaaagtataaaaagttTATTTCTTCAAACAAAACATCCATGTTTCAACAAGGAAAACACTAAAAGAAGCACCCtgcaaatacataaaataaagtttttcaTCATTG

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9172 lncRNA downstream 3880 22324550 ~ 22325383 (-) True G6762
TU9174 lncRNA downstream 63271 22264384 ~ 22265992 (-) True G6764
TU9134 lncRNA downstream 237706 22090500 ~ 22091557 (-) True G6731
XR_005640655.1 lncRNA downstream 288332 22035285 ~ 22040931 (-) False LOC120568056
XR_005639888.1 lncRNA upstream 265805 22601388 ~ 22603953 (-) True LOC120562974
TU9261 lncRNA upstream 315949 22651532 ~ 22653786 (-) True G6834
TU9272 lncRNA upstream 329887 22665470 ~ 22668740 (-) False LOC120565362
TU9327 lncRNA upstream 589248 22924831 ~ 22933891 (-) True G6879
TU9328 lncRNA upstream 637299 22972882 ~ 22973326 (-) True G6880
XM_039796121.1 mRNA downstream 8716 22275666 ~ 22320547 (-) False evi5l
XM_039796116.1 mRNA downstream 8717 22275666 ~ 22320546 (-) True evi5l
XM_039796166.1 mRNA downstream 56181 22266418 ~ 22273082 (-) True LOC120556520
XM_039796063.1 mRNA downstream 90403 22216256 ~ 22238860 (-) False LOC120556437
XM_039796054.1 mRNA downstream 90403 22216256 ~ 22238860 (-) True LOC120556437
XM_039806872.1 mRNA upstream 77017 22412600 ~ 22538510 (-) False LOC120562917
XM_039806869.1 mRNA upstream 77017 22412600 ~ 22538510 (-) True LOC120562917
XM_039799923.1 mRNA upstream 284087 22619670 ~ 22634940 (-) False LOC120558725
XM_039799912.1 mRNA upstream 284087 22619670 ~ 22634940 (-) True LOC120558725
XM_039799939.1 mRNA upstream 284087 22619670 ~ 22634939 (-) False LOC120558725
XR_005640901.1 other downstream 290112 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 619451 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 944420 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1006284 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 2284567 20042763 ~ 20044696 (-) False spink4
TU9329 other upstream 646342 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 752917 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 878273 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 1237122 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 1376244 23711827 ~ 23714086 (-) False LOC120557242

Expression Profile