RNA id: XM_039811171.1


Basic Information

Item Value
RNA id XM_039811171.1
length 4191
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC120565362
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 22665375 ~ 22692333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATAGACCCATAATGCATGTGAGACATGACCAACGAGGCCCACTGGGATAACTCAACCAGAATGCACAGCATGGAGCCAACagCTGTTCCCCCACAGTTCCAGAGCCAGAACTCTACCGCAGCATCCAGGCTGTGTTGCCCAGGGAAACAGACAACCAGCAGTCGCCTGACTGTTTCAACAAAGGCATGCTGAGATGGACACTTCATAAGAAGGTCCAAAACAATCCTGCCAACAGCTTAGCTCTGGTGTGGTTGCTGATAAAAGAGCTGGAAAAGGCTGAGAGATGGGACTCTCGCAAATGCATCATACCTCTGCTCCACACACTAATGTATGCCATTATTCAGACAGCCTACATTCCAGATGAGCTGTACAAGCGTGTTTATGACTTTTGTAAGAGACTCCTGACCTACCCTCATCCCTACTGCACTGTAGGCCTCAGCTACACAAGACagataaaaactgaacgctccATTCCAGGTCTGATGTACCAGAGAATGGTCACAGCAGAGCAGAGACTAAAAAATGAGTACTATCCCTTTCAGGAGAGGGTCTTTGTTCTGGCTGACCCAGAAGTCTTCTCCGGTTCTTTGGGGCAAGTCCTGTTGGGTGATATTGAGACGTCCGCATCAGTTTCAGATGGATCTCTGAGTCCTCTAGATTACATGTGCAGGGTGGTCCAACACTCCATACAGGCTGCTTTAGGAGCAGAGCAGTGCCACGGGCCGAAACTGGCCCAAGCTCTAAAGGACATGGGTCAAGACGTTGAGTCGCACTTTCAGGAAGTGTTGGCGGCTCTTGAGCAGAGGGCGGAAGAGAGCggcagaggggaggagggagcgCTGAGGAGCCGTCTTCAGCAGCTGTACAACAAGATCGTCACCGACACAGACTCAGAGCCATTGTCCAGTGGAGGACTGTGTGACTGCCCTCTTCCTAACCCAGAGATGAGCTTCTACCTGTGGACGGAGGATCTGGATATCTGGCGAGAGCTGGCCAAGTGGTTTCGATCCAGCTCCATGTCGGATCAGTTTTCCCTCATCCAGGAGCAGGAGGACTTTGAGCTGGGTGAGTCGCCCAGCGACCTGATGCCATCTGACATGACGCGCTTCTCCATCATGTCCAACGACAGCGGCATCGAAAGAGACCTGCCCCCCGGCGTTGATCCCTCCCCATCGTCATCTCTGGACACTGCCAGCATGAGTGCATCATGGGAACAATGCAAAACAAGTAAGCAAGAGTCGATGAGGCTGTCACGGCGTGGAGGCATCAAGATGAAACCGTCAGTGAAGGACAGTATGGTGCTGATGCAGGAGACCCTGGAGGATCACGCAAGCCTCGGagccggaggaggaggaggaggaagtggaggTAGGGTAGGAAGAAGAGGGGCGACTCTGCAGAGGCGGGCAGGAAGCAGCGCGATGCAGAACCCCTTCCTCAAGCAGCAGAGACAGTTTACTGCCAGGATAGTCGCCATGGGAGACGACAGGGTACTGGGCCGCCTGGCCAAGGCATACTATTTCTTCAGGAAAAGGGAAGCACGGAGGCTTTTTCTTACAATGAAAGTAAACCTCCAATTTTACTACATCCCTGTTTGCAGGGCCACAACTCCCATCTCCTCTATCAAAGAAAACCTTCATCAGTCCATGGGGAATCCCTGCACTCTTGGTTCCTACTTGAGCATGGTGGACCCGTGGTACAACTCTAACATCAAGAGTTTAGGCTGCATGATACCCAGACTGGCTAAGATGCACCAGACGAACCCAGGGAGGCCAAAAGAGCCTTTCGTGTCTGATGTCATTTCCTACTACGTTCGTACCGGCCAGCAGCCTGTCTACTTCACCATATACTTTGTTAAGATCACATTCACCAACACGGCAAAGGATCCTGTGGAAGATGTGTTTCTTACTCATCTAGAAATGGAGTTTCCTGAGTTCCGACAGATCTCAGCGTCAATTAGAGAAAAGCAGAAGAAGAGCTTAGGGGATCTATGCGGGGCTGTTATCTCGATGAATTACAGAAAGGTGACATTAAGTGGCCGAGACATTGACAAAGGAATCTCAGTCAGGACAACAGGCGCTCAGATCAATGCTATTCCTTCCAATAAAGCAGAAGATCTGAACTGTTTGACACTGACATTGAATGAATCtccaacaaaaactaaaaacaacatTGTGGAGTCAAAGTTTCGGTCCAGTAACATTAAGATTCGCACTTTGGAGAGTCGATCTTTCACTGTTACACTGGACAGAGATTTTCGCAGGACCTACAAAGACGTGCAGAGcatCGAGATCTCCCCGTGTCTTGATCCCGGGTACTGCGTCCAGAAAACCATGAGGTCCAAATACAAGTTGGGAGCGGACAAAGACGCTGGACTGAGCAAATACATGAGCAAAAGACTTCTTCTACCAATCAACACATTTGCTGGCATCATCACCTGACGTGGTGGACTAACCCCACAGAAAAACTTTGAGAGTTAAGACCAGCCACGCTATGTTTTGATGGTGGAATGGTTGTTCCTTCTGCCTTCAGAAGTCCAATCTGACATATCAAAGGACAAAAGGAATCACCTTTGAGCCATACTGAGCTGCTCctaaaccattttttttattcagtcagTAAGGACTGACTGGCATGTATAGAAAAAGACTATACATCAAAAGCAACACATACCGTATTTGTCGCACTTCTTGCGGCTAAATAACCAGTTGACTTCTTTTACAGTAACAAAGTGGTATTACACATTAGGGTGTGACCGAACTCCTTACAGTGTTTATGTACCACTGTACATATATTTAGACAGTCAGTAAATGTATGCAGATTAGATTGCCAAAGAACAATACTGCCTTTGACACTAGAGAAGGCAACAGTGGAAAATTAGTAAGCAAAGGTATGTACCTGTAGACATTAAAGATTTCAGGGCTACTGATATTTGGATATTTGATATTTCACTAATAATTTGACATCATAAAAAACTCCAAACTCTGAAAATCAGTTTCTCAAAGTCACCACTTGGTGAGGCAGATTTGGAGGGTTGACAGTTACTCTACTTCATAGACACACTACCTTTTACTACCttattgtcacacacacatacagtgcacACAAAAGAATACAGACTGGCCTGGCCTGTCAGCAACTATAACGTACAGATTGTTAAAAGACTGGCATGAGGATGGCTGGCGATTACTTTACCTGTTGCCTTTGTCTTAGCTGAATCATTCAAATAAGTTGGTATTCCCGTACCTGTTGCATAATGTAAGTTGTTATGAAGGTGCAAGTGATTGACATTGGCCTTGGGTTTAGGTTTTTGGAAATGTTCTGGAAGGTTTTAAGAACCGCACACTATGTTCAGTGCAGAAGCTAGAGCCATGTGTCAGGAACTACTACACAACAGAAGCAGCttttctcttttactgtctcagACGGACGAGGGGATCATGCACACACTGAGCTGCATGAAGTAACCTGACTTCAAGCCACTGTCTACGACCAAGACATGCAAGATTCTGGGTACACTCAAATGTAAAACTTGTACACATGCCagcaaatgttttaaatgtatcaGCCACAAGGTGTGAAAATCACCTCTGACCCCCCAATCCACTCACTGTGGTGCGTTGGATGATAAATATGGTAAATTGCATCTTTTTGCACTAAAACGGCAAGGCTGTTTTTGTTAAGTCCCTGTGGGAGTGGAGCAACAGTGTGTAAAGCATATAATTATGACTATGTGTTATTACGTCTAACGTTTAACACAAATATTGGTTCAAttgtcatttattaaaatgttgcttttgCCACATAATTattagataacacacacacccaagaaTGGCTCCGGAGCCTTTTTTGTATCCCCACAGGTATGATCTCAATAAAGGTCAACAGCCTCAGGaactggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtctgcgtgtgtgtctgcgtgtgtgtctgctggcCTAGCGGTAAAATCATGAGAAATTCATGGTACAGTTTGCACATTATTTGTCATCTAATGTCATATATGAAGACGATGCCattaaaatcaaaatgtaagtgtgtaaataaattattttgttttgtaaaatggtccttgtgttttatgataaaGGTGGTTAATCTCAATGCTTTGAATAAACAACGACTTACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9261 lncRNA downstream 11589 22651532 ~ 22653786 (-) True G6834
XR_005639888.1 lncRNA downstream 61422 22601388 ~ 22603953 (-) True LOC120562974
TU9185 lncRNA downstream 336003 22328519 ~ 22329372 (-) False LOC120556502
TU9172 lncRNA downstream 339992 22324550 ~ 22325383 (-) True G6762
TU9174 lncRNA downstream 399383 22264384 ~ 22265992 (-) True G6764
TU9327 lncRNA upstream 242748 22924831 ~ 22933891 (-) True G6879
TU9328 lncRNA upstream 290799 22972882 ~ 22973326 (-) True G6880
TU9360 lncRNA upstream 371236 23053319 ~ 23058150 (-) True G6907
XR_005638858.1 lncRNA upstream 448371 23130454 ~ 23134183 (-) False LOC120556418
TU9408 lncRNA upstream 448435 23130518 ~ 23134314 (-) False LOC120556418
XM_039799979.1 mRNA downstream 162 22654181 ~ 22665213 (-) True LOC120558762
XM_039799989.1 mRNA downstream 3833 22654181 ~ 22661542 (-) False LOC120558762
XM_039799965.1 mRNA downstream 23631 22635884 ~ 22641744 (-) False si:dkey-45d16.4
XM_039799958.1 mRNA downstream 23631 22635884 ~ 22641744 (-) True si:dkey-45d16.4
XM_039799939.1 mRNA downstream 30436 22619670 ~ 22634939 (-) False LOC120558725
XM_039793817.1 mRNA upstream 10704 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA upstream 10704 22692787 ~ 22720815 (-) True pik3r5
XM_039794020.1 mRNA upstream 103412 22785495 ~ 22834464 (-) True stx8
XM_039814978.1 mRNA upstream 311785 22993868 ~ 22997980 (-) True mchr1a
XM_039805339.1 mRNA upstream 488724 23170807 ~ 23173617 (-) True LOC120561952
XR_005640901.1 other downstream 626224 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 955563 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1280532 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1342396 21322898 ~ 21322979 (-) True trnas-aga
TU8496 other downstream 2620679 20042763 ~ 20044696 (-) False spink4
TU9329 other upstream 299842 22981925 ~ 22988500 (-) True G6881
TU9396 other upstream 406417 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 531773 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 890622 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 1029744 23711827 ~ 23714086 (-) False LOC120557242

Expression Profile