RNA id: TU9360



Basic Information


Item Value
RNA id TU9360
length 1022
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G6907
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23053319 ~ 23058150 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tcaatttattccaataacacaTTTTCATAACAGATGTGAATTTAAAATGCCGGCTTACTGAACAACAAAATTCCATCTGAATCAAAACCTCAAAAGACatgtataaaaacaaaacaaaaaaagaccaaaGTTCTCTCTAAAacctccagaaaaaaaaagcaagattTAAATTTCTTCAGCACATTAGACTCACTGCAGCTTACAAGTCGTCTACACCGCGCAGTTCGGACATGTTGAGATACAAAAAGGACAGTGTGATTAAATCTATCTACATCAACTGTGCCGCCGTCTTTGAGCCTTTTGTAAAAGTATTCCACTGGATGGTATCAACACTGGTCATGAACATTTGAAGACTGGGGATAACAAAGATGTTCAGGGATGAAAAAGGGAGGTAGGGATGTCCGTAGGAAAAAAGTCTTTAAAGAGAAGAGCCTCCGGTTTGCTGTTGGAACACGTCAATCGTATCTTCATCCTCCATTTCTAGCTGCGAGGGTGTGTCTGTTTCATTGATGGGCTGACCATCAAATCGAAATCGTATTTGCCTCATTGACAGCCCCTGTCGTTCACAATAAGCTTTCATCAGTTTGCTGAGAGGAGTGTGCCTTTTAATCTTGAATTGCACCACTGAGCCATCCTGCCCAGCCACCTTCAGGTTGATGTGCTCATTGTTCTCCGTCTTCACTCCCtcCTTGGTTTTTTCGTCTGCCATGGCTGCTCCTGCGTCTGTGTGCGCCTGTTCTGCTGCGGCTGCGCTGTCTATCTGGCGCGCCACTTTGCGTGGGCTGGGCTCATGGATGTATTGGCTGGGCTGTAGTGCACGGTCTATAGCCATGAGTGCACACAGCTGCGCCAAATCAACTGCGCGCTCTTAAACTGTAGCTAATGTCCCAGTACTACCAACGATTTGAAGACACAGATTTCTTTAAAACATCTGCAAGTTGATAGAAGTACCTGACAGTGTATCGTGTGTCAAAGGCTTTTTGAAAGTCCAAGAATAAAATAAGGTGTTCATCATCTTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9328 lncRNA downstream 79993 22972882 ~ 22973326 (-) True G6880
TU9327 lncRNA downstream 119428 22924831 ~ 22933891 (-) True G6879
TU9272 lncRNA downstream 384579 22665470 ~ 22668740 (-) False LOC120565362
TU9261 lncRNA downstream 399533 22651532 ~ 22653786 (-) True G6834
XR_005639888.1 lncRNA downstream 449366 22601388 ~ 22603953 (-) True LOC120562974
XR_005638858.1 lncRNA upstream 72304 23130454 ~ 23134183 (-) False LOC120556418
TU9408 lncRNA upstream 72368 23130518 ~ 23134314 (-) False LOC120556418
TU9409 lncRNA upstream 72368 23130518 ~ 23135775 (-) False LOC120556418
TU9411 lncRNA upstream 72368 23130518 ~ 23135775 (-) True LOC120556418
TU9410 lncRNA upstream 74740 23132890 ~ 23134314 (-) False LOC120556418
XM_039814978.1 mRNA downstream 55339 22993868 ~ 22997980 (-) True mchr1a
XM_039794020.1 mRNA downstream 218855 22785495 ~ 22834464 (-) True stx8
XM_039793817.1 mRNA downstream 332504 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA downstream 332504 22692787 ~ 22720815 (-) True pik3r5
XM_039811136.1 mRNA downstream 369582 22667122 ~ 22683737 (-) False LOC120565362
XM_039805339.1 mRNA upstream 112657 23170807 ~ 23173617 (-) True LOC120561952
XM_039782309.1 mRNA upstream 362130 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 372787 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 372787 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA upstream 372787 23430937 ~ 23438265 (-) False znf207b
TU9329 other downstream 64819 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1014168 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1343507 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1668476 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1730340 21322898 ~ 21322979 (-) True trnas-aga
TU9396 other upstream 30350 23088500 ~ 23164937 (-) True G6924
TU9432 other upstream 155706 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 514555 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 653677 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 693876 23752026 ~ 23768841 (-) True G7071

Expression Profile