RNA id: TU9396



Basic Information


Item Value
RNA id TU9396
length 837
RNA type TUCP
GC content 0.42
exon number 2
gene id G6924
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23088500 ~ 23164937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTGCCAAGTGAACCACAAGTAACATTGCTGTGTCTTATCAGGCCTGGACCGTCATGCATAGTTTTCCGTCTTTGTGAGGGACATTGTTTTGAAGAGGTCTGATCAGATTAAGAGACATGTTGCCCCCTAACtatttagtgttttaaaaacaaCTACAGCACAGATGATCTTTAgttatgcatttaaaaaaaaaacttgcgtATGAATATTACCAAGGTCTGTCTGACCTGCCaagatgttttcttttcatgacCAACACACTCCTTAATACTTGCCTGGGTCCAGACCGTTGAATCTGTCCGCAAAACATACACTACAGTTGGCTTGTGTTTTAGATTCCTCTTAGCTCTTAGTTGCACAATACTAAACGACGGTGTGTTTATGTTGCTGTAGTGACATGCGTCGCTTTAAATTTCAGGTAAAGCATGACCTCACTTGTAACAGTGGCTGAAATTACTGCATGACATTTCATTGTGTGAAGCAGGATTGGGCCAATAGGCCTAAAAGGTGTAAAGCATGGTGCTCAACAACATTTACCTTTATTTTGTGCATTTTGTACTTCAAATGTGGCCTCTTCCTCTTTGTTTCCACTGGCATTGAACACTTTGCAGGTGTATTTGGTGAAAATGGATCCTTTCAGCAAAGACAGCTTGCTAGAGAGGTTAAACAGACCACTTTCTGTCTGCTTCGCCTCCATTTGAGAGCTTTTTGTCCACTCCGTGTTGTTCTCATCAAACCAGCGAAGTTGACCTTTTGGGTAGCCACCATCAGAATTGCACATCAGGGTAACATCTGTATTAAGAGGTACTGTCTCAGGGTTGGAGTGGATAgttggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9360 lncRNA downstream 30350 23053319 ~ 23058150 (-) True G6907
TU9328 lncRNA downstream 115174 22972882 ~ 22973326 (-) True G6880
TU9327 lncRNA downstream 154609 22924831 ~ 22933891 (-) True G6879
TU9272 lncRNA downstream 419760 22665470 ~ 22668740 (-) False LOC120565362
TU9261 lncRNA downstream 434714 22651532 ~ 22653786 (-) True G6834
TU9441 lncRNA upstream 85258 23250195 ~ 23253876 (-) True G6947
TU9498 lncRNA upstream 243340 23408277 ~ 23409202 (-) True G6986
TU9506 lncRNA upstream 262575 23427512 ~ 23429145 (-) True G6993
TU9508 lncRNA upstream 343337 23508274 ~ 23508560 (-) True G6995
TU9616 lncRNA upstream 401823 23566760 ~ 23570673 (-) False LOC120555765
XM_039814978.1 mRNA downstream 90520 22993868 ~ 22997980 (-) True mchr1a
XM_039794020.1 mRNA downstream 254036 22785495 ~ 22834464 (-) True stx8
XM_039793817.1 mRNA downstream 367685 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA downstream 367685 22692787 ~ 22720815 (-) True pik3r5
XM_039811136.1 mRNA downstream 404763 22667122 ~ 22683737 (-) False LOC120565362
XM_039805339.1 mRNA upstream 5870 23170807 ~ 23173617 (-) True LOC120561952
XM_039782309.1 mRNA upstream 255343 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 266000 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 266000 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA upstream 266000 23430937 ~ 23438265 (-) False znf207b
TU9329 other downstream 100000 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1049349 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1378688 21708540 ~ 21709812 (-) True G6592
unassigned_transcript_59 other downstream 1703657 21384771 ~ 21384843 (-) True trnar-ccg_1
unassigned_transcript_58 other downstream 1765521 21322898 ~ 21322979 (-) True trnas-aga
TU9432 other upstream 48919 23213856 ~ 23242290 (-) True G6943
TU9627 other upstream 407768 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 546890 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 587089 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 609788 23774725 ~ 23810964 (-) False palm3

Expression Profile