RNA id: TU9441


Basic Information

Item Value
RNA id TU9441
length 524
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G6947
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23250195 ~ 23253876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGTATTACCCTCTATGGTGCCCCATTTTGTTTTCCTTCCCAAAATCTTCTTTCCGTTCACCTGGTACTCCTGGTCACTGCCCACAACAGCAAAGGGATCATCTCCCGGATTTTGTCATTGATCATCCTGTCATCTGCATCCTCGTCAAACTCTTTCTGAGGGTAAACATCGATTCCATTGGCTCGCAGCTCTTCCCTGATCGTCTGTTTAAAGTAGTCCCTCTCCTCTAGGGTGAGTGTGTCGGCCTTGGCAATGACGGGGACGATGTTGACCACTTTACTGAGACGTCTCATGAACTCCACATCCAGAGGCCTCAGACTGGAGGAAGATAGAGATGACAGGACAACTTCATTTCATGCATAAATGTCTGTAACTATGTGTGGTTGTTATTTGGAAACTCCAAATTAAGGCATCGTggtctaaaacaaaaaaaggagcaACAACTCACAACACTGCAGATTTGTGCTCTAAACCTTTAACATATTCATTTTTTCCCACTGTGGCACAAAAACAAATCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9409 lncRNA downstream 114420 23130518 ~ 23135775 (-) False LOC120556418
TU9411 lncRNA downstream 114420 23130518 ~ 23135775 (-) True LOC120556418
TU9408 lncRNA downstream 115881 23130518 ~ 23134314 (-) False LOC120556418
TU9410 lncRNA downstream 115881 23132890 ~ 23134314 (-) False LOC120556418
XR_005638858.1 lncRNA downstream 116012 23130454 ~ 23134183 (-) False LOC120556418
TU9498 lncRNA upstream 154401 23408277 ~ 23409202 (-) True G6986
TU9506 lncRNA upstream 173636 23427512 ~ 23429145 (-) True G6993
TU9508 lncRNA upstream 254398 23508274 ~ 23508560 (-) True G6995
TU9616 lncRNA upstream 312884 23566760 ~ 23570673 (-) False LOC120555765
TU9617 lncRNA upstream 312884 23566760 ~ 23570673 (-) False LOC120555765
XM_039805339.1 mRNA downstream 76578 23170807 ~ 23173617 (-) True LOC120561952
XM_039814978.1 mRNA downstream 252215 22993868 ~ 22997980 (-) True mchr1a
XM_039794020.1 mRNA downstream 415731 22785495 ~ 22834464 (-) True stx8
XM_039793817.1 mRNA downstream 529380 22692787 ~ 22720815 (-) False pik3r5
XM_039793753.1 mRNA downstream 529380 22692787 ~ 22720815 (-) True pik3r5
XM_039782309.1 mRNA upstream 166404 23420280 ~ 23431271 (-) True LOC120546964
XM_039782118.1 mRNA upstream 177061 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 177061 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA upstream 177061 23430937 ~ 23438265 (-) False znf207b
XM_039782428.1 mRNA upstream 184955 23438831 ~ 23501859 (-) True rhbdl3
TU9432 other downstream 7905 23213856 ~ 23242290 (-) True G6943
TU9396 other downstream 85258 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 261695 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1211044 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1540383 21708540 ~ 21709812 (-) True G6592
TU9627 other upstream 318829 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 457951 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 498150 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 520849 23774725 ~ 23810964 (-) False palm3
TU9658 other upstream 520849 23774725 ~ 23780324 (-) False palm3

Expression Profile