RNA id: TU9506


Basic Information

Item Value
RNA id TU9506
length 1549
lncRNA type intronic
GC content 0.58
exon number 2
gene id G6993
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 23427512 ~ 23429145 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatgtatgtatatatatatgtatgtatgtgtgtgtgtgtgtatatataggtcAGCTCACctttaatgagaaataaaaatgatcaCTTTTCTTAAGTGGTATCTAGTGCAGTGGCCTTTTGGGCTTGTGGGCCATTAAATGGGTACAAACATTGAATCCTACATTTTCCACAATGTAACTCAATAGCATTTTAATTAGACCCTTCCCACCTGATAAACACCCATGTCTTTCAAACAGcaatttcattcatttaaaatgaagcAATACCTACGTGACCACATGACACAGGTTATAGCTTCTGTGTGAATAGGATTTCGTTTGTGGTAATCacagaattttaaaatgaatttatcCATTAAAATTAACTGCAACATTTTCTGCTACTGTCCATAAACCGTTCTTGTTATTCTGAATAAACCACAGAACACAGTTTACACTTTTTATAGGGCTATTTCTTTGAACAGAAACTGAGATCTCAAAACTTAGACCAATCAAACCAACATTATCAGCATGGCTAGATGCCACTAGAGAGAAGTGaggaaatattttttcttaatttgggtgaactgaatAAGTAAAAGCTCAGTTGTTGGCAGCAACATGTACTTAAGTGTTAAAAGTAAATGTATTCATTATGAATGATGAGCTGTTTACCACTAGTATTtaaggaaaatgtttttttgacattaaagtttttaaatgtattacattttagataaatGTGGTTTTGACCAACTGTCATGACCAGTCAAAAATCCCATGTAAGTCTGTATCGCTGGCCCCTTTTTAAATTAGTGTTTGCAAACTCTTGTTTTTGGATCaggtgtatttgtattttaaggtGCTGTACTTGAAATACTGAGGGGAAAAAAGTGGTCTGGGATTGTCTCCACACGGCTCAAACCCAACACGTCAAATACCGACGCGGTCACAACACTCGGCACTCGGCACTGGCATGCACACGCCGCCGGACCGGCtgtcaaaacaaaacagagaagcATGAATTAcaacacagagggagtgtgacttcacGCCATTACTCAGATGCTCAGAATGCTATTactacctttttaaaaaaatatatatatatatatttgtttgctgctatattaatgttctgaatgttgaGTACAGCCCCTTAAAAGGAATACAAGCTGCCCTATAGAGAACAATTGTCCAGAAAGTAGATTGACTGACTGAACATGTTACGCATCACAATGTCagaattatgtttttgttattaataAAACTATTGCATTATTTTGCTGCCACTTGTTTTCCTTTGATTAAATTAAGACGTGAGGTGAAATCCACTATTCTGAGGCTCCCAGCACCTTTAGGTGctcagtgtgcatgtgtgggtaTTCAATAATAGTGCACCACCTAGTGGCATATGGGGGATATTATTGACTCCTTTAACAGACCAACTACTTCCCATGATAGAAATCCTAATAAAATATGTGGTGTTAGACAGTCTGATCAGTTCATAGTTTAAGGTAAATACTGTTATATGAGAGGATTGTAATAATATGGAATATGAAGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9498 lncRNA downstream 18310 23408277 ~ 23409202 (-) True G6986
TU9441 lncRNA downstream 173636 23250195 ~ 23253876 (-) True G6947
TU9409 lncRNA downstream 291737 23130518 ~ 23135775 (-) False LOC120556418
TU9411 lncRNA downstream 291737 23130518 ~ 23135775 (-) True LOC120556418
TU9408 lncRNA downstream 293198 23130518 ~ 23134314 (-) False LOC120556418
TU9508 lncRNA upstream 79129 23508274 ~ 23508560 (-) True G6995
TU9616 lncRNA upstream 137615 23566760 ~ 23570673 (-) False LOC120555765
TU9617 lncRNA upstream 137615 23566760 ~ 23570673 (-) False LOC120555765
TU9618 lncRNA upstream 137615 23566760 ~ 23570673 (-) True LOC120555765
XR_005638754.1 lncRNA upstream 138415 23567560 ~ 23571034 (-) False LOC120555765
XM_039805339.1 mRNA downstream 253895 23170807 ~ 23173617 (-) True LOC120561952
XM_039814978.1 mRNA downstream 429532 22993868 ~ 22997980 (-) True mchr1a
XM_039794020.1 mRNA downstream 593048 22785495 ~ 22834464 (-) True stx8
XM_039793817.1 mRNA downstream 706697 22692787 ~ 22720815 (-) False pik3r5
XM_039782118.1 mRNA upstream 1792 23430937 ~ 23438268 (-) False znf207b
XM_039782055.1 mRNA upstream 1792 23430937 ~ 23438267 (-) True znf207b
XM_039782181.1 mRNA upstream 1792 23430937 ~ 23438265 (-) False znf207b
XM_039782428.1 mRNA upstream 9686 23438831 ~ 23501859 (-) True rhbdl3
XM_039782593.1 mRNA upstream 9686 23438831 ~ 23501857 (-) False rhbdl3
TU9432 other downstream 185222 23213856 ~ 23242290 (-) True G6943
TU9396 other downstream 262575 23088500 ~ 23164937 (-) True G6924
TU9329 other downstream 439012 22981925 ~ 22988500 (-) True G6881
XR_005640901.1 other downstream 1388361 22039009 ~ 22039151 (-) True LOC120569580
TU8945 other downstream 1717700 21708540 ~ 21709812 (-) True G6592
TU9627 other upstream 143560 23572705 ~ 23573049 (-) True G7065
XR_005638947.1 other upstream 282682 23711827 ~ 23714086 (-) False LOC120557242
TU9637 other upstream 322881 23752026 ~ 23768841 (-) True G7071
TU9657 other upstream 345580 23774725 ~ 23810964 (-) False palm3
TU9658 other upstream 345580 23774725 ~ 23780324 (-) False palm3

Expression Profile